Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20279
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              97   1e-22
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.2  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    21   9.6  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   9.6  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 97.5 bits (232), Expect = 1e-22
 Identities = 46/46 (100%), Positives = 46/46 (100%)
 Frame = +2

Query: 578 EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEA 715
           EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEA
Sbjct: 1   EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEA 46



 Score = 39.5 bits (88), Expect = 3e-05
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = +3

Query: 717 CGIHETTYNSIMKCD 761
           CGIHETTYNSIMKCD
Sbjct: 47  CGIHETTYNSIMKCD 61


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +3

Query: 585 PPLHPAAPSRSLTNFPTVRSSLSETKDSVAQRLSSNPR 698
           PP    +     +  P   S LS T  ++A+ L   PR
Sbjct: 678 PPARSPSSQAQASQCPQTASLLSSTHSTLARSLMEGPR 715


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +2

Query: 326 AVRVRSYHRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSRSRP 457
           ++  +++HR        C P   +L +I + P HP +  S S P
Sbjct: 62  SLTAQAHHRLYPAFSSSCDPVPGNLEQIGSRPLHPPAS-STSLP 104


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -3

Query: 386 VGDTVAGVQHDTGGTTGRVQREHGLDGDVHG 294
           VGD +A ++ D  G    +  E+G  G   G
Sbjct: 42  VGDDIAWMKFDKEGRLRAINPEYGFFGVAPG 72


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -2

Query: 756 TS*WSYMWSRGCRKASIPKNEGWKR 682
           +S W   ++    +  IPK+ GW++
Sbjct: 197 SSEWDSDYTDKSNEKKIPKSSGWRK 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 250,910
Number of Sequences: 438
Number of extensions: 6037
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)