Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20275
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    30   0.43 
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    29   0.56 
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    27   4.0  
SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces pombe...    27   4.0  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   6.9  
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    25   9.2  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    25   9.2  
SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|c...    25   9.2  

>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 615 CFWIPNFYSLYHFKDFFINFFYVLIISFNVIY-TFILCVLT 734
           C W  N     + K FF+  FY+ + S  V+Y TF+    T
Sbjct: 127 CMWFKNCVGFRNHKFFFLECFYLNLYSICVLYSTFVAITKT 167


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 627 PNFYSLYHFKDFFINFFYVLIISFNVIYTFILCVLTIYLKCI 752
           P++  +  F+D F+     L+   N +Y  +LCVL  Y +C+
Sbjct: 416 PDYARIATFEDKFVGAISSLVAEDNSLYVTVLCVLAPY-RCL 456


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = +3

Query: 603 RASC-CFWIPNFYSLYHFKD 659
           R  C  +W PNF++LY F D
Sbjct: 256 RGLCHAYWAPNFWALYSFVD 275


>SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 180 RKKKLPNLFINVATTFMKANSESTSMAERRLLIHG 76
           RK   P+L  +VA  F++  SE    A +++L+HG
Sbjct: 28  RKWTSPDLSEDVAQKFLETASEMKFDASKQVLVHG 62


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 633 FYSLYH-FKDFFINFFYVLIISFNVIYTFILCVLTIYL 743
           F SL+  F+  F   F+V    F ++Y+FI   L  ++
Sbjct: 7   FASLFSSFESLFFRLFFVCSFFFPLLYSFIFATLHAFV 44


>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 609 SCCFWIPNFYSLYHFKDFFIN 671
           +C F I  FYSL+H   F IN
Sbjct: 145 ACIFVISLFYSLFHAHPFRIN 165


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 618 FWIPNFYSLYHFKDFFINFFYVLIISF-NVIYTF 716
           F+  N+++ Y F DF + +F +   S  N++Y F
Sbjct: 284 FFSSNWFTTYQFNDFNLAYFNIRTRSLNNLLYWF 317


>SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 115

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 684 LIISFNVIYTFILCVLTIYLKCIFYFIN 767
           +++++N  + F   V+TIY  C+F+F N
Sbjct: 31  MVLAYN--HKFDCIVVTIYCGCLFWFSN 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,821,485
Number of Sequences: 5004
Number of extensions: 53248
Number of successful extensions: 102
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)