Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20275
         (778 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0483 - 29391929-29392256,29393048-29393148,29393640-293938...    33   0.19 
11_01_0762 + 6400052-6401845,6401977-6402609                           30   2.4  

>02_05_0483 -
           29391929-29392256,29393048-29393148,29393640-29393834,
           29394124-29394240,29394376-29394447,29394840-29394950,
           29395029-29395127,29395991-29396047,29396607-29397008,
           29397249-29397303,29397725-29397809,29398023-29398130,
           29398229-29398295,29398717-29398875,29399277-29399405
          Length = 694

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +1

Query: 469 TWRFYFISL*TCQTCLFVCNCVRRSF 546
           T+ FY   L  CQ  LFVC+C  RSF
Sbjct: 475 TYSFYNFDLGYCQVSLFVCSCSERSF 500


>11_01_0762 + 6400052-6401845,6401977-6402609
          Length = 808

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = +3

Query: 666 INFFYVLIISFNVIYTFILCVL 731
           ++FFYVL++   V+Y F++C+L
Sbjct: 96  LDFFYVLVLCQCVLYCFLICLL 117


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,339,603
Number of Sequences: 37544
Number of extensions: 319886
Number of successful extensions: 515
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)