Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20275
         (778 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_215| Best HMM Match : ALG3 (HMM E-Value=0.18)                       29   4.2  

>SB_215| Best HMM Match : ALG3 (HMM E-Value=0.18)
          Length = 521

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 633 FYSLYHFKDFFINFFYVLIISFNVIYTFILCVLTIYL 743
           F SLY F+D F++  Y+L + F  +Y F    +++Y+
Sbjct: 2   FVSLYIFRDLFVS-LYILRVMFVSLYIFRDLFVSLYI 37



 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 633 FYSLYHFKDFFINFFYVLIISFNVIYTFILCVLTIYL 743
           F SLY F+D F++  YVL + F  +Y   +  +++Y+
Sbjct: 32  FVSLYIFRDVFVS-LYVLRVMFVSLYILRVMFVSLYI 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,321,482
Number of Sequences: 59808
Number of extensions: 382832
Number of successful extensions: 577
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)