Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20275
         (778 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC199172-5|ABO33273.1|  305|Caenorhabditis elegans F-box a prote...    30   1.6  
U56963-12|AAB38128.1|  341|Caenorhabditis elegans Serpentine rec...    30   2.1  
U40029-1|AAA81123.3|  360|Caenorhabditis elegans Serpentine rece...    29   2.8  
U61946-2|AAC24387.1|  341|Caenorhabditis elegans Serpentine rece...    29   3.7  
AF024498-7|AAF39806.2|  279|Caenorhabditis elegans Serpentine re...    29   4.9  
Z83123-8|CAB05613.2|  330|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical pr...    28   8.6  
AL110487-6|CAB54433.2|  472|Caenorhabditis elegans Hypothetical ...    28   8.6  

>AC199172-5|ABO33273.1|  305|Caenorhabditis elegans F-box a protein
           protein 30 protein.
          Length = 305

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
 Frame = +3

Query: 618 FWI-----PNFYSLYHFKDFFINFFYVLIISFNVIYTFILCVLTIYLKCIFYFINV 770
           FWI     P     +HF+DF IN + + + S   +   +L   T + KCIF+ +N+
Sbjct: 198 FWISPFDCPPIEYFFHFEDFTINIYNISMQSVIKVRDDLLQRCT-FQKCIFFVLNL 252


>U56963-12|AAB38128.1|  341|Caenorhabditis elegans Serpentine
           receptor, class v protein33 protein.
          Length = 341

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = +3

Query: 654 KDFFINF--FYVLIISFNVIYTF--ILCVLTIYLKCIFYFI 764
           ++FF N+  FY+   S+N IY F  I C   I+L    YF+
Sbjct: 82  REFFFNYQSFYIAAASYNSIYYFLYIRCTGIIFLSLQRYFV 122


>U40029-1|AAA81123.3|  360|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 39 protein.
          Length = 360

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = +3

Query: 660 FFINFFYVLIISFNVIYTFILCVLTIYLKCIFYFINV*H 776
           ++ +++ +L I  +++ TF+ C+LTI +  I   + V H
Sbjct: 22  YYSDYYAMLFIIIHILLTFLCCLLTIQVCLIINSVRVFH 60


>U61946-2|AAC24387.1|  341|Caenorhabditis elegans Serpentine
           receptor, class h protein220 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +3

Query: 612 CCFWIPNFYSLYHFKDFFI----NFFYVLIISFNVIYTFILCVL 731
           C  W+P  Y  Y F  FF     NF YVL+ +  ++ T ++ V+
Sbjct: 257 CIIWVPIIY--YTFIGFFNAAINNFMYVLMATHGLVSTLVMLVV 298


>AF024498-7|AAF39806.2|  279|Caenorhabditis elegans Serpentine
           receptor, class x protein104 protein.
          Length = 279

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +3

Query: 609 SCCFWIPNFYSLYHFKDFFINFFYVLIISFNVIYTFILCVLTIYLKCIFYF 761
           S C  + NFY  Y F       FYVL  S  +  + IL    +Y+  I +F
Sbjct: 19  SFCGILINFYMFYFFLKLQKTSFYVLCSSKTISNSIILFAYLLYVGPINFF 69


>Z83123-8|CAB05613.2|  330|Caenorhabditis elegans Hypothetical
           protein T04A11.10 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 633 FYSLY-HFKDFFINFFYVLIISFNVIYTFILCVLTIY 740
           F SLY HFKD + N      +  N I   I+C++T Y
Sbjct: 188 FGSLYIHFKDSWHNVINAPFLVLNSIIWLIICLITNY 224


>Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical
           protein F08H9.12 protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
 Frame = +3

Query: 615 CFWIPNFYSLYHF-----KDF-FINFFYVLII-SFNVIYTFILCVLTIYL 743
           C  IP ++ +++      KDF  + FFY +++ S+ +  TFIL  + +YL
Sbjct: 30  CLIIPFYFYVHNLNWHKEKDFPIVQFFYKMVLFSYFLFSTFILYFIVLYL 79


>AL110487-6|CAB54433.2|  472|Caenorhabditis elegans Hypothetical
           protein Y39E4B.7 protein.
          Length = 472

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +3

Query: 615 CFWIPNFYSLYHFKDFFINFFYVLIISFNVIYTFILCVLTIY 740
           C W+ N     +++ FF   F++  +S +++Y F LC   ++
Sbjct: 133 CPWVHNCVGKRNYRYFF---FFLCSLSIHMMYVFFLCFAYVW 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,519,157
Number of Sequences: 27780
Number of extensions: 297211
Number of successful extensions: 680
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)