Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20275
         (778 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04270.1 68418.m00419 zinc finger (DHHC type) family protein ...    30   1.5  
At2g48050.1 68415.m06014 expressed protein ; expression supporte...    28   7.9  
At1g66020.1 68414.m07493 terpene synthase/cyclase family protein...    28   7.9  

>At5g04270.1 68418.m00419 zinc finger (DHHC type) family protein low
           similarity to Golgi-specific DHHC zinc figer protein
           [Mus musculus] GI:21728103; contains Pfam profile
           PF01529: DHHC zinc finger domain
          Length = 284

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +3

Query: 615 CFWIPNFYSLYHFKDFFINFFYVLIISFNVIYTFILCVLTIYLKCIFYFINV 770
           C WI N     ++K FFI  FY  + S   IY+ +L V   +     Y  NV
Sbjct: 135 CLWINNCVGYANYKAFFILVFYATVAS---IYSTVLLVCCAFKNGDSYAGNV 183


>At2g48050.1 68415.m06014 expressed protein ; expression supported
           by MPSS
          Length = 1500

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +3

Query: 618 FWIPNFYSLYHFKDFFINFFYVLIISFNVIYTFILCVLTIYLKCI 752
           FWI N ++LY  +   IN   +L+ SF ++    +  + +   C+
Sbjct: 419 FWIENMFNLYGLE---INMIALLLASFALLNAISMVYIALLAACV 460


>At1g66020.1 68414.m07493 terpene synthase/cyclase family protein
           contains Pfam profile: PF01397: Terpene synthase family
          Length = 598

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 648 HFKD-FFINFFYVLIISFNVIYTFILCVLTIYLKCI 752
           +F+D   +N+FYVL + +   +++   +LT Y  C+
Sbjct: 311 YFRDNIVVNYFYVLAVIYTPQHSYERIMLTQYFTCL 346


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,271,430
Number of Sequences: 28952
Number of extensions: 264303
Number of successful extensions: 511
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)