Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20274
         (784 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    27   0.22 
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   6.4  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   6.4  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    22   6.4  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   6.4  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   6.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   8.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   8.4  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +2

Query: 590  PADTIAAPSVEETQNKASFETIESGLKSLETNFNSGLNQLSEGIQIVATFKADGEAAAKV 769
            P+DT    + ++T+  A+ ETI  GLK   TN++  +   + G   V T     +    V
Sbjct: 1142 PSDTWFDENTKDTKITAASETILHGLKKY-TNYSMEVLAYTSGGDGVRTTPIHCQTEQDV 1200

Query: 770  PVPPL 784
            P  P+
Sbjct: 1201 PEAPI 1205


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 116 STTFKGLSSASGTLSGMEAARAASTNIVSNRAACS 12
           STT + LSS + + S   +   A TN  +++++ S
Sbjct: 160 STTSQNLSSPASSTSSTSSTEKAGTNNNNSKSSQS 194


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +3

Query: 306 PLVDLRNPGPPQHQEHETQNPEHHED 383
           P ++ +N   P  + HE     HHE+
Sbjct: 96  PPINHQNYNEPYQRTHENMLLRHHEE 121


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +3

Query: 306 PLVDLRNPGPPQHQEHETQNPEHHED 383
           P ++ +N   P  + HE     HHE+
Sbjct: 96  PPINHQNYNEPYQRTHENMLLRHHEE 121


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +3

Query: 306 PLVDLRNPGPPQHQEHETQNPEHHED 383
           P ++ +N   P  + HE     HHE+
Sbjct: 96  PPINHQNYNEPYQRTHENMLLRHHEE 121


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 342 HQEHETQNPEHHE 380
           HQ+H  QN  H E
Sbjct: 314 HQQHHQQNMSHEE 326


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 777 GTGTFAAASPSALNVATI*IPSD 709
           G G F +  PSAL ++T  +PSD
Sbjct: 199 GAG-FRSPYPSALPISTSSLPSD 220


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 777 GTGTFAAASPSALNVATI*IPSD 709
           G G F +  PSAL ++T  +PSD
Sbjct: 91  GAG-FRSPYPSALPISTSSLPSD 112


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,053
Number of Sequences: 336
Number of extensions: 3370
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21168876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)