Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20274
(784 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch... 29 0.57
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 28 1.7
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 27 2.3
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 27 4.0
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 27 4.0
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces... 27 4.0
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 27 4.0
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 26 5.3
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce... 26 7.0
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 26 7.0
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 25 9.3
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|... 25 9.3
>SPAC1952.17c ||SPAC890.01c|GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 619
Score = 29.5 bits (63), Expect = 0.57
Identities = 15/62 (24%), Positives = 30/62 (48%)
Frame = +1
Query: 1 RHEKLHAALLLTIFVLAARAASIPDKVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNS 180
+H K + + + + + R ++ ++ E D PLN D+ S +E D ++ ID
Sbjct: 64 KHRKTYTSFVQELLIDPWRKLTLHEESGENSDHPLNTSDD-SKWKEYFDDNQILEQIDKD 122
Query: 181 LR 186
+R
Sbjct: 123 IR 124
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 27.9 bits (59), Expect = 1.7
Identities = 22/105 (20%), Positives = 52/105 (49%)
Frame = +1
Query: 76 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLK 255
K P +E P V L+ + I +I +++ + ++ +V++ P + ++ +I+ +
Sbjct: 377 KAPTSEAPPKGHVKQLAKQLGNIYMPQSINNVEPTSHSSISKVVN-PSEKVISKIERACL 435
Query: 256 VI*KTLKCRMKMRKSRGL*SI*EIPGPRSIKSTKHRILNTTKMLK 390
+ +KM K+ L P PR++ +T+H+I + ++ K
Sbjct: 436 AGNGNVHPSIKMEKNLEL-----NPHPRTLNATEHKINSRIQVSK 475
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 27.5 bits (58), Expect = 2.3
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Frame = +3
Query: 237 NQTVVESDLENVEVPDENEEIK----RPLVDLRNPGPPQHQEHETQNPEHHEDA--EKIV 398
N+ D N++ + + K +P D RN GP Q + + + PE H ++ E+ +
Sbjct: 125 NKESTNLDNSNMDESENQKNFKIEEPKPSGDFRNEGPKQCDDSKIEKPELHVNSKIEEPI 184
Query: 399 SSVKNDINTAE 431
+ ++ N E
Sbjct: 185 HRIDSEHNEPE 195
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 26.6 bits (56), Expect = 4.0
Identities = 16/62 (25%), Positives = 25/62 (40%)
Frame = +3
Query: 333 PPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINDS 512
PP H ++ TQ HEDA+ S + + I R ++ G + EQ +
Sbjct: 609 PPLHLKNTTQTNNAHEDAQSSNLSQNHSLFYERIPQRPSYRIEKQNKGIYEDENEQSISA 668
Query: 513 RP 518
P
Sbjct: 669 MP 670
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 26.6 bits (56), Expect = 4.0
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +3
Query: 336 PQHQEHETQNPEHHEDAEKIVSSVKNDIN 422
P +++ T++ E HED + V +++D N
Sbjct: 24 PNNKKSRTRSTESHEDRQAKVQKIQSDFN 52
>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 491
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 599 TIAAPSVEETQNKASFETIESGLKSLETNFNSGLNQLSE 715
TI +PS++E+ ++ + +ETN NS L + SE
Sbjct: 168 TIVSPSLKESDFESEEKATNDNNGLIETNHNSKLEESSE 206
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 325 IPGPRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRK 432
+P P S+ HR LN K+ F P + T++K
Sbjct: 224 LPSPVSLSRYMHRSLNWKKLYDIGFAPFPLGSTEKK 259
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 26.2 bits (55), Expect = 5.3
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +3
Query: 258 DLENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSS 404
D E+ + P + E K P + GP + H+ +H+E E+ + S
Sbjct: 388 DKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHQGPKEKHNERPEQNMQS 436
>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 459
Score = 25.8 bits (54), Expect = 7.0
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Frame = +1
Query: 106 NVVDNLSSEQE--------LIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEI 240
NVVD+LS EQE L DQ N + NSLR+ +P + V++I
Sbjct: 137 NVVDDLSKEQESRKESAPQLYDQINAFIEKVNSLRSG-----SVPFTITVDDI 184
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = +2
Query: 587 KPADTIAAPSVEETQNKASFETIESGLKSLETNFNSGLNQLSEGIQIVATFKADGE 754
KP + + PS+ + K T+ + K + T S N I++TF + E
Sbjct: 398 KPINPTSFPSLTSSTKKIPSTTLPTSSKMITTTTPSVSNNTQSSFLIISTFTSSYE 453
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 25.4 bits (53), Expect = 9.3
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 328 PGPRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRKSLFVKASRKCQTV 471
P + + K I +K++ + LP+ +T Q K LFVK+ C+ V
Sbjct: 39 PAVNTASALKSVISEESKIIVSN-LPTDVTEAQVKELFVKSIGPCKRV 85
>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 162
Score = 25.4 bits (53), Expect = 9.3
Identities = 17/74 (22%), Positives = 36/74 (48%)
Frame = +1
Query: 67 IPDKVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKP 246
+ D++ + + + +D + E+E A TIKD SL +N ++ + E+++
Sbjct: 48 VQDELKQLQLRQKKAIDAIQ-EEEWKSNAKTIKDSQGSLDSN---LLSAEFRSFQEKLEK 103
Query: 247 SLKVI*KTLKCRMK 288
+ K LK ++K
Sbjct: 104 QSSINDKELKIKLK 117
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,860,238
Number of Sequences: 5004
Number of extensions: 55697
Number of successful extensions: 221
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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