Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20274
         (784 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.)                32   0.60 
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_17141| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_49487| Best HMM Match : Zip (HMM E-Value=0.014)                     29   3.2  
SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_49733| Best HMM Match : GLTT (HMM E-Value=0.8)                      29   4.2  
SB_39673| Best HMM Match : TRAP-delta (HMM E-Value=1.2e-32)            29   5.6  
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_9370| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.6  
SB_1291| Best HMM Match : SWIRM (HMM E-Value=5e-23)                    29   5.6  
SB_35532| Best HMM Match : Peptidase_S49 (HMM E-Value=2.7)             28   7.4  
SB_20662| Best HMM Match : bZIP_1 (HMM E-Value=0.89)                   28   7.4  
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_42730| Best HMM Match : Ank (HMM E-Value=0.00016)                   28   9.8  
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  
SB_44752| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  

>SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 652

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
 Frame = +3

Query: 327 PGPPQHQEHETQNPEHHEDAEKIVSSVKN---DINTAEIALRQGFQEVSDGIG--KWYAR 491
           P PP H + E     H E  E+I S  K+   D+  A+  L++  +++ + +G  ++   
Sbjct: 282 PNPPPHLDEEKIKQLHEELKEEIKSMAKDSEKDLEDAKKDLKEEIEQIKEEVGYLRYMEA 341

Query: 492 TEQINDSRPACNISKKI 542
            + +N ++P    + KI
Sbjct: 342 KQLLNKTKPNYKEAYKI 358


>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 8/103 (7%)
 Frame = +3

Query: 273 EVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIAL---- 440
           EVPD+   +   +  + +  PP+H+     N  HH    K  S+ +  I  AE  L    
Sbjct: 47  EVPDQ-VWLADDVSSVSSYSPPKHKHSSKSNGHHHNSRHKSESAKEPPILKAERKLLAST 105

Query: 441 ----RQGFQEVSDGIGKWYARTEQINDSRPACNISKKISALRY 557
                  +  VSD I +    T+   D R +  IS++  A  Y
Sbjct: 106 SPTRSANYPYVSDRIPRKSTYTQDFADGRKSKAISRRDEAYGY 148


>SB_17141| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 540

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
 Frame = +1

Query: 1   RHEKLHAALLLTIFVLAARAASIPDKVPEA-EDKPLN-------VVDNLSSEQELIDQAN 156
           +HE+   A    + + + R   + DKV E  E KP N        VDN+ S +E + + +
Sbjct: 273 KHEREKRAKTEALTIASTRTLKVTDKVTEIIECKPANKYDTGRRTVDNIKSRREKLRERS 332

Query: 157 TIKDIDNSL--RANKKEVID-IP-VKVIVEEIKPSLKVI*KTLKCRMKMRKSRG 306
             K+ DN     +N K   D +P V++  E  +   + + +TL  R+  +KS G
Sbjct: 333 ESKEDDNQFCDSSNAKAECDTLPRVRLWTENKREKRENVLETL--RIGGKKSDG 384


>SB_49487| Best HMM Match : Zip (HMM E-Value=0.014)
          Length = 510

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/73 (21%), Positives = 30/73 (41%)
 Frame = +3

Query: 255 SDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEI 434
           +D    +V   ++ I+     LR+     H ++   +  HH   +KI S          +
Sbjct: 43  TDGSGSDVSSGSDSIENEKFTLRDDHTDNHHQNHHDHHHHHHHDKKIDSKTSIATVAWMV 102

Query: 435 ALRQGFQEVSDGI 473
            +  GF  +SDG+
Sbjct: 103 IVSDGFHNLSDGL 115


>SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1293

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
 Frame = +3

Query: 249 VESDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHH-----EDAEKIVSSVKN 413
           V SD E+ EV        RPL++  N    +H+ +   NP  +     ++  K V+ +K 
Sbjct: 695 VHSDTESEEVDVVTVSYDRPLLNRTNSSSSEHEVYVPNNPHKNNNRIKKNQTKTVNGLKE 754

Query: 414 DINTAEIALRQGFQEVSDG 470
            +N     +     E+S G
Sbjct: 755 HVNGKLSPIVSPKDEISTG 773


>SB_49733| Best HMM Match : GLTT (HMM E-Value=0.8)
          Length = 149

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 430 KSLFVKASRKCQTVLENGTLVPSKLTTPGQL 522
           K++   A R C+  +    LVPS LTT G L
Sbjct: 98  KNVLTPARRSCEKFVTERRLVPSSLTTKGNL 128


>SB_39673| Best HMM Match : TRAP-delta (HMM E-Value=1.2e-32)
          Length = 504

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
 Frame = +2

Query: 515 ASLQHFQENFGAQIQKLNETLHFIKPADTIAAPSVEETQNKASFETIESGLK--SLETNF 688
           AS    QEN   QI  LNE L  +    T A    E  QN     T  + +K  S+ ++ 
Sbjct: 128 ASASITQENAQKQINHLNELLTTLTDIITSAKEDWEGEQNSVGLLTCGAQVKAPSVNSSS 187

Query: 689 NSGLNQLSEGIQIVAT 736
           NS    + E I +  T
Sbjct: 188 NSPDESVIEAINVFVT 203


>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1906

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
 Frame = +3

Query: 270  VEVPDENEEIKRPLVDLRNPGPPQHQEHETQN---PEHHEDAEKI--VSSVKNDINTAEI 434
            +  PDE E +   + DL NP   +  E E Q+     + +D EKI  V S     N + I
Sbjct: 828  INSPDEREIVLSEIYDLDNPSDDEELETEIQDALETANEQDKEKILAVYSALRSPNLSGI 887

Query: 435  ALRQ 446
             L Q
Sbjct: 888  ELAQ 891


>SB_9370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +3

Query: 243 TVVESDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDA 386
           T+ + +L + ++P E  E +   V+ + P P +  E E   P+  E A
Sbjct: 101 TLTDDELSDDDIPKEIMEAEEQQVENKFPEPEEEDEEEDDTPQGLEGA 148


>SB_1291| Best HMM Match : SWIRM (HMM E-Value=5e-23)
          Length = 158

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +3

Query: 243 TVVESDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDA 386
           T+ + +L + ++P E  E +   V+ + P P +  E E   P+  E A
Sbjct: 12  TLTDDELSDDDIPKEIMEAEEQQVENKFPEPEEEDEEEDDTPQGLEGA 59


>SB_35532| Best HMM Match : Peptidase_S49 (HMM E-Value=2.7)
          Length = 149

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +1

Query: 64  SIPDKVPEAEDKPLNVVDNLSSEQELIDQ-ANTIKDIDNSLRANKKEVIDIPVKVIVEEI 240
           SIP   P+ + K LN V+N++  +E  ++ A+ + D+ N + + K E     V   V+ +
Sbjct: 74  SIPLAKPQKQQKVLNAVENINWPEEKKERFADVLNDVHN-ISSEKSEEEGDGVVFFVKSL 132

Query: 241 K 243
           K
Sbjct: 133 K 133


>SB_20662| Best HMM Match : bZIP_1 (HMM E-Value=0.89)
          Length = 589

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/63 (22%), Positives = 27/63 (42%)
 Frame = +3

Query: 246 VVESDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINT 425
           V  S+ +    P +   ++R       P P  H+  ++ +     D+E+  SSV ND   
Sbjct: 427 VQRSNSQRSSSPTKEVTVQRSSSQRGPPSPSAHKSLQSSHQVQRSDSERAFSSVLNDPQA 486

Query: 426 AEI 434
            ++
Sbjct: 487 GDV 489


>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3760

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/63 (22%), Positives = 27/63 (42%)
 Frame = +3

Query: 246  VVESDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINT 425
            V  S+ +    P +   ++R       P P  H+  ++ +     D+E+  SSV ND   
Sbjct: 3533 VQRSNSQRSSSPTKEVTVQRSSSQRGPPSPSAHKSLQSSHQVQRSDSERAFSSVLNDPQA 3592

Query: 426  AEI 434
             ++
Sbjct: 3593 GDV 3595


>SB_42730| Best HMM Match : Ank (HMM E-Value=0.00016)
          Length = 999

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 23/75 (30%), Positives = 35/75 (46%)
 Frame = +3

Query: 240 QTVVESDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDI 419
           +T  E   EN EVP+ NEE      D R  G     E E    E +E   ++  + KN +
Sbjct: 263 ETHDEKPEENPEVPEVNEEDFIRAADARRRGEDGDTE-ELDGEEKYEHLHQVFVT-KNAV 320

Query: 420 NTAEIALRQGFQEVS 464
              E+  R+ F+E++
Sbjct: 321 LCTEV--RKNFKELT 333


>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2851

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = +3

Query: 243  TVVESDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEK 392
            +++ES  E+    DE +E+ +   ++ +  P +  E  TQ+ +HH+   K
Sbjct: 1743 SLMESSFEDKSAEDELKEMTK---EIESMAPTEEHEDTTQHHDHHKHRGK 1789


>SB_44752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 421

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +3

Query: 261 LENVEVPDENEEIKRP---LVDLRNPGPPQHQEHETQNPEHHED 383
           L N  +PDE+ E  RP   L DL +  PP     E  +  +HED
Sbjct: 184 LVNTRMPDESPEPTRPPPPLDDLDDLPPPPPPPPEDDSIHNHED 227


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,316,148
Number of Sequences: 59808
Number of extensions: 406137
Number of successful extensions: 1463
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1461
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)