Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20274
         (784 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61948-4|AAB03146.1|  316|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z79596-2|CAC42251.1|  838|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z79596-1|CAB01857.1|  830|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z71180-3|CAA94892.2|  763|Caenorhabditis elegans Hypothetical pr...    29   2.8  
L29031-1|AAB72228.2|  830|Caenorhabditis elegans dynamin protein.      29   2.8  
AL021474-7|CAA16311.2|  763|Caenorhabditis elegans Hypothetical ...    29   2.8  
AF167982-1|AAD50438.1|  838|Caenorhabditis elegans dynamin protein.    29   2.8  
Z83223-4|CAB05716.2|  534|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z70306-3|CAA94325.1|  318|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z68132-2|CAA92220.2|  762|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AL117193-1|CAB54981.1|  767|Caenorhabditis elegans Hypothetical ...    28   6.6  
AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical...    28   8.7  

>U61948-4|AAB03146.1|  316|Caenorhabditis elegans Hypothetical
           protein C46A5.6 protein.
          Length = 316

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = +1

Query: 439 FVK-ASRKCQTVLENGTLVPSKLTTPGQLATFPRKFRRSDTKV 564
           F+K A R+  TVLE  T  P+K T   QL+   RKF+R+DT+V
Sbjct: 66  FLKVAKRRSSTVLETAT--PAK-TPKIQLSERRRKFQRNDTEV 105


>Z79596-2|CAC42251.1|  838|Caenorhabditis elegans Hypothetical
           protein C02C6.1b protein.
          Length = 838

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +1

Query: 55  RAASIPDKVPEAEDKPLNVVDNLSSEQELIDQANTIKD-IDNSLRANKKEVIDIPVKVIV 231
           RA   P+K    ED+    +++ S + +L  Q  TI++ +D+ +R   K + D+  K ++
Sbjct: 621 RAGVYPEKQKAQEDESQQEMEDTSIDPQLERQVETIRNLVDSYMRIITKTIKDLVPKAVM 680

Query: 232 EEI 240
             I
Sbjct: 681 HLI 683


>Z79596-1|CAB01857.1|  830|Caenorhabditis elegans Hypothetical
           protein C02C6.1a protein.
          Length = 830

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +1

Query: 55  RAASIPDKVPEAEDKPLNVVDNLSSEQELIDQANTIKD-IDNSLRANKKEVIDIPVKVIV 231
           RA   P+K    ED+    +++ S + +L  Q  TI++ +D+ +R   K + D+  K ++
Sbjct: 621 RAGVYPEKQKAQEDESQQEMEDTSIDPQLERQVETIRNLVDSYMRIITKTIKDLVPKAVM 680

Query: 232 EEI 240
             I
Sbjct: 681 HLI 683


>Z71180-3|CAA94892.2|  763|Caenorhabditis elegans Hypothetical
           protein F22E12.1 protein.
          Length = 763

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +3

Query: 285 ENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQ 446
           E    +RP V +  P PP  Q   + N  +H +   +V+  K+ ++  E ALR+
Sbjct: 373 EQARYQRPPVQMPPPPPPPQQNSPSVNENYHPE---LVNQFKSHLDEHEKALRR 423


>L29031-1|AAB72228.2|  830|Caenorhabditis elegans dynamin protein.
          Length = 830

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +1

Query: 55  RAASIPDKVPEAEDKPLNVVDNLSSEQELIDQANTIKD-IDNSLRANKKEVIDIPVKVIV 231
           RA   P+K    ED+    +++ S + +L  Q  TI++ +D+ +R   K + D+  K ++
Sbjct: 621 RAGVYPEKQKAQEDESQQEMEDTSIDPQLERQVETIRNLVDSYMRIITKTIKDLVPKAVM 680

Query: 232 EEI 240
             I
Sbjct: 681 HLI 683


>AL021474-7|CAA16311.2|  763|Caenorhabditis elegans Hypothetical
           protein F22E12.1 protein.
          Length = 763

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +3

Query: 285 ENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQ 446
           E    +RP V +  P PP  Q   + N  +H +   +V+  K+ ++  E ALR+
Sbjct: 373 EQARYQRPPVQMPPPPPPPQQNSPSVNENYHPE---LVNQFKSHLDEHEKALRR 423


>AF167982-1|AAD50438.1|  838|Caenorhabditis elegans dynamin protein.
          Length = 838

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +1

Query: 55  RAASIPDKVPEAEDKPLNVVDNLSSEQELIDQANTIKD-IDNSLRANKKEVIDIPVKVIV 231
           RA   P+K    ED+    +++ S + +L  Q  TI++ +D+ +R   K + D+  K ++
Sbjct: 621 RAGVYPEKQKAQEDESQQEMEDTSIDPQLERQVETIRNLVDSYMRIITKTIKDLVPKAVM 680

Query: 232 EEI 240
             I
Sbjct: 681 HLI 683


>Z83223-4|CAB05716.2|  534|Caenorhabditis elegans Hypothetical
           protein E01G4.4 protein.
          Length = 534

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 330 GPPQHQEHETQNPEHHEDAEKIVSSVKN 413
           GPP HQ+H  Q  +H+  A    SS  N
Sbjct: 133 GPPVHQQHYQQQQQHYGAATSAPSSSYN 160


>Z70306-3|CAA94325.1|  318|Caenorhabditis elegans Hypothetical
           protein C06G8.4 protein.
          Length = 318

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -3

Query: 257 TFNDGLISSTITLTGMSMTSFLFARRLLSMSLMVLAWSMSSCSL 126
           T++  LI+ T+T  G  +T FL  +R++     +L  S   CSL
Sbjct: 40  TYSLVLINITLTNVGACVTGFLLDQRIIQSGKSMLYVSYGYCSL 83


>Z68132-2|CAA92220.2|  762|Caenorhabditis elegans Hypothetical
           protein F09C8.2 protein.
          Length = 762

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 285 ENEEIKRPLVDLRNPGPPQHQEHETQNPE 371
           EN+  +   V+ + P P QHQ+ + Q PE
Sbjct: 404 ENQRYEGNFVEYQPPPPQQHQQQQPQAPE 432


>AL117193-1|CAB54981.1|  767|Caenorhabditis elegans Hypothetical
           protein Y105C5A.1 protein.
          Length = 767

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 602 IAAPSVEETQNKASFETIESGLKSLETNFNSGLNQLSEG 718
           +  PS + T+NK     I+   + L +NFN+G+  +S G
Sbjct: 215 VVLPSRKSTRNKKDMNQIKED-EELVSNFNNGIGVISRG 252


>AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical
            protein W03F11.4 protein.
          Length = 1406

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = +3

Query: 339  QHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINDSRP 518
            + +E + +NP + E  +K  +   ND+N  E   RQ FQE    I K  A+  +  D RP
Sbjct: 1323 KRKEFDEKNPGYREKQQKDKALWDNDVN-KEYEERQKFQEQLKKIQKENAKKPKSED-RP 1380


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,975,646
Number of Sequences: 27780
Number of extensions: 319810
Number of successful extensions: 1381
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1381
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)