Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20274
(784 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 23 2.4
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 23 4.2
AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength rhodo... 23 4.2
AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamat... 23 4.2
AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength rhodo... 23 4.2
AF023666-1|AAC14552.1| 363|Apis mellifera sn-glycerol-3-phospha... 23 4.2
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 23 4.2
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 23 4.2
AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamat... 23 4.2
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 22 5.6
AF388659-1|AAK71995.1| 782|Apis mellifera 1D-myo-inositol-trisp... 22 5.6
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 22 7.4
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 23.4 bits (48), Expect = 2.4
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 193 KKEVIDIPVKVIVEEIKPSLKVI 261
KKE+ DI +V VEEI KV+
Sbjct: 570 KKEIYDILPEVDVEEILGEAKVL 592
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 22.6 bits (46), Expect = 4.2
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = -3
Query: 149 WSMSSCSLDKLSTTFKGLSSASGTLSG 69
W+M+ + D+ + KGLS +++G
Sbjct: 141 WTMTMIAFDRYNVIVKGLSGKPLSING 167
>AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength
rhodopsin protein.
Length = 152
Score = 22.6 bits (46), Expect = 4.2
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = -3
Query: 149 WSMSSCSLDKLSTTFKGLSSASGTLSG 69
W+M+ + D+ + KGLS +++G
Sbjct: 107 WTMTMIAFDRYNVIVKGLSGKPLSING 133
>AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamate
receptor 1 protein.
Length = 843
Score = 22.6 bits (46), Expect = 4.2
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +2
Query: 527 HFQENFGAQIQKLNETLHFIKPADTIAAPSVEETQNKAS 643
H + G LN++LHF++ + + SV E ++++
Sbjct: 20 HILDTCGRDTYALNQSLHFVRASLSNLDMSVLECADRSA 58
>AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength
rhodopsin protein.
Length = 154
Score = 22.6 bits (46), Expect = 4.2
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = -3
Query: 149 WSMSSCSLDKLSTTFKGLSSASGTLSG 69
W+M+ + D+ + KGLS +++G
Sbjct: 17 WTMTMIAFDRYNVIVKGLSGKPLSING 43
>AF023666-1|AAC14552.1| 363|Apis mellifera sn-glycerol-3-phosphate
dehydrogenase protein.
Length = 363
Score = 22.6 bits (46), Expect = 4.2
Identities = 8/31 (25%), Positives = 17/31 (54%)
Frame = +1
Query: 91 EDKPLNVVDNLSSEQELIDQANTIKDIDNSL 183
E P+ +++NL + E ID+ ++ S+
Sbjct: 333 ETMPMELIENLRNHPEYIDETRNYQECKCSI 363
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 22.6 bits (46), Expect = 4.2
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +1
Query: 1 RHEKLHAALLLTIFVLAARAASIPDKVPE-AED 96
+ E+ +A + AA PDK+PE AED
Sbjct: 1661 QRERYYATIHKVALQQAANTGGGPDKIPETAED 1693
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 22.6 bits (46), Expect = 4.2
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +1
Query: 1 RHEKLHAALLLTIFVLAARAASIPDKVPE-AED 96
+ E+ +A + AA PDK+PE AED
Sbjct: 1657 QRERYYATIHKVALQQAANTGGGPDKIPETAED 1689
>AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamate
receptor protein.
Length = 933
Score = 22.6 bits (46), Expect = 4.2
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +2
Query: 527 HFQENFGAQIQKLNETLHFIKPADTIAAPSVEETQNKAS 643
H + G LN++LHF++ + + SV E ++++
Sbjct: 110 HILDTCGRDTYALNQSLHFVRASLSNLDMSVLECADRSA 148
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 22.2 bits (45), Expect = 5.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 693 AVLISYLKVFKLWLRSKPTERL 758
AV + L + LWL S+ TER+
Sbjct: 263 AVTMMLLTLTVLWLDSRSTERM 284
>AF388659-1|AAK71995.1| 782|Apis mellifera
1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
Length = 782
Score = 22.2 bits (45), Expect = 5.6
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +3
Query: 261 LENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQN 365
+E E DE + I+ P+V + PP + ET +
Sbjct: 171 VEENETYDEFDTIRIPIVRSLSKSPPNDEGIETDS 205
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 21.8 bits (44), Expect = 7.4
Identities = 6/25 (24%), Positives = 15/25 (60%)
Frame = +3
Query: 684 ISIAVLISYLKVFKLWLRSKPTERL 758
+++ +++ + + LWL TER+
Sbjct: 251 VTLTIVLMTMTLMTLWLEPSSTERM 275
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,965
Number of Sequences: 438
Number of extensions: 4111
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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