Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20273
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    29   0.68 
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    27   2.1  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    25   8.4  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    25   8.4  
SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein Yip12|Schiz...    25   8.4  
SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein Yip11|Schiz...    25   8.4  

>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -3

Query: 372 RVNV-TGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTVS 247
           R NV T ++ N + +   + +PT +T TGS ++  S M +TV+
Sbjct: 57  RPNVSTSSTSNEVRKSVPVGNPTVHTKTGSSSSPASKMRNTVN 99


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 239 IKCDTVEAMSLQEAVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGSG 388
           I+  T+   SLQ    L   V+ +    HVR++  F +  ++  LV+G+G
Sbjct: 559 IQKSTLSLKSLQIGTILQ-EVMTMAREHHVRIEANFANTVLSILLVEGAG 607


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 345 NSMSRRTCLDSPTFNTATGSFTASCSDMASTVSHLI 238
           NS     CLD    N  TG+ T  C ++   +S LI
Sbjct: 421 NSTKALACLDYLNENIFTGNQTMKCLEIHQELSELI 456


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 405 PIKCTGPEP*TRVNVTGASGNSMSRRTCLDSPTFNTAT 292
           P + +   P +RVNVT ASG+     T       N +T
Sbjct: 240 PTRTSTTRPLSRVNVTNASGSISKNSTSPSKVKVNAST 277


>SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein
           Yip12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 194 ELVAAWVFCFCLWIP 150
           +L + W+FCFC  +P
Sbjct: 170 DLQSQWIFCFCYKLP 184


>SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein
           Yip11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 194 ELVAAWVFCFCLWIP 150
           +L + W+FCFC  +P
Sbjct: 170 DLQSQWIFCFCYKLP 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,768,949
Number of Sequences: 5004
Number of extensions: 50297
Number of successful extensions: 100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)