Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20273
         (731 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0168 - 1874297-1874645,1874968-1875137,1875688-1875807,187...    32   0.54 
10_08_0649 + 19589807-19591024                                         29   3.8  
10_08_0645 - 19562886-19564484                                         28   8.8  

>04_01_0168 -
           1874297-1874645,1874968-1875137,1875688-1875807,
           1876750-1876812
          Length = 233

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = -3

Query: 381 P*TRVNVTGASGNSMSRRTCLDSPTFNTATGSFT----ASCSDMASTVSHLIHLVWH 223
           P T  + T A   S S + C DSPT +T++G  T    +S S  A+ +  L+   W+
Sbjct: 4   PTTSYSTTSAMERSNSTKRCSDSPTVSTSSGRVTTTAWSSTSGAATLLLPLLQQSWY 60


>10_08_0649 + 19589807-19591024
          Length = 405

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 373 CSGFGASTLNWTPSPW 420
           C+G+GA+  +W P PW
Sbjct: 31  CAGWGAAAASWRPRPW 46


>10_08_0645 - 19562886-19564484
          Length = 532

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -1

Query: 650 GDGTTSPKWVSRRFVH 603
           GDG  SPKW S  F H
Sbjct: 186 GDGAPSPKWTSAPFTH 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,812,800
Number of Sequences: 37544
Number of extensions: 350257
Number of successful extensions: 890
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)