Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20273
         (731 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45284| Best HMM Match : Nucleoplasmin (HMM E-Value=8.7e-10)         32   0.55 
SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)                  28   9.0  

>SB_45284| Best HMM Match : Nucleoplasmin (HMM E-Value=8.7e-10)
          Length = 282

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +3

Query: 102 EFFYGVTLSSSHQSETWDPEAKAEYPR----SNKLVIRQALLGPDA 227
           E F+G  LS S  + TW+PE   E        +KLV+ QA LG  A
Sbjct: 7   EDFWGCVLSKSEDTVTWNPEFDGEDTLLGQIEHKLVLSQACLGSKA 52


>SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 24/83 (28%), Positives = 40/83 (48%)
 Frame = +2

Query: 125 FIITSVRDMGSRGKSRIPTQQQARHSSSIVRSRCQTR*IKCDTVEAMSLQEAVKLPVAVL 304
           F+ T  R +  R KS +P +    HS S+ RSR  TR ++  T++  +L  + +L     
Sbjct: 362 FLFTMER-LNDRRKS-VPVRMDKHHSLSVRRSRYITRSMEPITIQPSNLLTSFRLGTEPP 419

Query: 305 KVGESRHVRLDIEFPDAPVTFTL 373
            V ES+ +   ++  D     TL
Sbjct: 420 PVPESKTLAKLLDASDIGKLHTL 442


>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
          Length = 1392

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 106 FSMVSPFHHHISQRHGIQRQKQNTHAATSSSFVK 207
           FS+  P    I+ RHG+ RQK   HA+   SF K
Sbjct: 338 FSLHRPVED-INYRHGLGRQKLLFHASRGKSFYK 370


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,449,539
Number of Sequences: 59808
Number of extensions: 394236
Number of successful extensions: 958
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)