Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20273
         (731 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC054868-1|AAH54868.1|  178|Homo sapiens nucleophosmin/nucleopla...    32   1.8  
BC041067-1|AAH41067.1|  178|Homo sapiens nucleophosmin/nucleopla...    32   1.8  
AY049737-1|AAL12172.1|  178|Homo sapiens nucleophosmin/nucleopla...    32   1.8  
AF081280-1|AAC31609.1|  178|Homo sapiens nucleoplasmin-3 protein.      32   1.8  
AF079325-1|AAD51496.1|  178|Homo sapiens nucleophosmin/nucleopla...    30   7.4  

>BC054868-1|AAH54868.1|  178|Homo sapiens
           nucleophosmin/nucleoplasmin, 3 protein.
          Length = 178

 Score = 32.3 bits (70), Expect = 1.8
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +2

Query: 242 KCDTVEAMSLQ---EAVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGSGPV 394
           +C+ VE ++     + + +PVA LK+     + LD      PVTF L  GSGPV
Sbjct: 78  ECNVVEVVARNHDHQEIAVPVANLKLSCQPMLSLDDFQLQPPVTFRLKSGSGPV 131


>BC041067-1|AAH41067.1|  178|Homo sapiens
           nucleophosmin/nucleoplasmin, 3 protein.
          Length = 178

 Score = 32.3 bits (70), Expect = 1.8
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +2

Query: 242 KCDTVEAMSLQ---EAVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGSGPV 394
           +C+ VE ++     + + +PVA LK+     + LD      PVTF L  GSGPV
Sbjct: 78  ECNVVEVVARNHDHQEIAVPVANLKLSCQPMLSLDDFQLQPPVTFRLKSGSGPV 131


>AY049737-1|AAL12172.1|  178|Homo sapiens
           nucleophosmin/nucleoplasmin 3 protein.
          Length = 178

 Score = 32.3 bits (70), Expect = 1.8
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +2

Query: 242 KCDTVEAMSLQ---EAVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGSGPV 394
           +C+ VE ++     + + +PVA LK+     + LD      PVTF L  GSGPV
Sbjct: 78  ECNVVEVVARNHDHQEIAVPVANLKLSCQPMLSLDDFQLQPPVTFRLKSGSGPV 131


>AF081280-1|AAC31609.1|  178|Homo sapiens nucleoplasmin-3 protein.
          Length = 178

 Score = 32.3 bits (70), Expect = 1.8
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +2

Query: 242 KCDTVEAMSLQ---EAVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGSGPV 394
           +C+ VE ++     + + +PVA LK+     + LD      PVTF L  GSGPV
Sbjct: 78  ECNVVEVVARNHDHQEIAVPVANLKLSCQPMLSLDDFQLQPPVTFRLKSGSGPV 131


>AF079325-1|AAD51496.1|  178|Homo sapiens
           nucleophosmin/nucleoplasmin3 protein.
          Length = 178

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +2

Query: 275 EAVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGSGPV 394
           + + +PVA LK+     + LD      PVTF L  GSGPV
Sbjct: 92  QEIAVPVANLKLSCQPMLSLDDFQLQPPVTFRLKSGSGPV 131


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,231,204
Number of Sequences: 237096
Number of extensions: 2013219
Number of successful extensions: 4132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4132
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8679165170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)