Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20273
         (731 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81513-5|CAB04175.1|  332|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z22174-2|CAA80130.2|  410|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    29   4.5  
Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.      28   5.9  
U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein...    28   5.9  
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein...    28   5.9  
AF098999-6|AAC68724.2|  787|Caenorhabditis elegans Half transpor...    28   5.9  
Z80214-5|CAJ76929.1|  916|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z80214-4|CAB02263.1|  982|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AL132952-7|CAB61139.2|  670|Caenorhabditis elegans Hypothetical ...    28   7.8  

>Z81513-5|CAB04175.1|  332|Caenorhabditis elegans Hypothetical
           protein F26D2.4 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 671 RYNYT*NGDGTTSPKWVSRRFVHFLAFFLGDAA-LPLALFD 552
           RYNY    D T+  + + R   HF+ + L   A LP AL D
Sbjct: 120 RYNYLVRTDSTSQSRKIKRVIQHFINYLLAFLAFLPAALED 160


>Z22174-2|CAA80130.2|  410|Caenorhabditis elegans Hypothetical
           protein K01B6.3 protein.
          Length = 410

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 589 SWAMQLCLWHYSTFSLFCPWVHLLHYLI 506
           SWA+ +C+   STF+L C    +LHY I
Sbjct: 80  SWALLVCIIE-STFALICFLAVMLHYAI 106


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
           protein F57F4.4 protein.
          Length = 2090

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
 Frame = +1

Query: 322 ACTS--GH*IPRCACYIYSCSGFGASTLNWTPSPW 420
           ACT+  G  I  C CY   C+         TPSPW
Sbjct: 185 ACTNLAGTNIQGCCCYKQDCTSLAPMNNPPTPSPW 219


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 1 protein.
          Length = 2153

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
 Frame = +1

Query: 322 ACTS--GH*IPRCACYIYSCSGFGASTLNWTPSPW 420
           ACT+  G  I  C CY   C+         TPSPW
Sbjct: 185 ACTNLAGTNIQGCCCYKQDCTSLAPMNNPPTPSPW 219


>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 598 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYL 509
           WHS+   +  CL  + TF+ FC  + +LHY+
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYI 321


>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 598 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYL 509
           WHS+   +  CL  + TF+ FC  + +LHY+
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYI 321


>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
          Length = 1440

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 598 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYL 509
           WHS+   +  CL  + TF+ FC  + +LHY+
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYI 321


>U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical
           protein K06A9.1c protein.
          Length = 825

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -3

Query: 366 NVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTVS 247
           + +GA+ +S S  T + SP+ +++ GS   S S  AST S
Sbjct: 527 STSGATTSSGSAGTTMTSPSQSSSVGSSQGSTSPAASTTS 566


>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
           protein K06A9.1a protein.
          Length = 1032

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -3

Query: 366 NVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTVS 247
           + +GA+ +S S  T + SP+ +++ GS   S S  AST S
Sbjct: 734 STSGATTSSGSAGTTMTSPSQSSSVGSSQGSTSPAASTTS 773


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
           protein K06A9.1b protein.
          Length = 2232

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -3

Query: 366 NVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTVS 247
           + +GA+ +S S  T + SP+ +++ GS   S S  AST S
Sbjct: 734 STSGATTSSGSAGTTMTSPSQSSSVGSSQGSTSPAASTTS 773


>U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical
           protein T20F5.6 protein.
          Length = 794

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 153 DPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQWKP 263
           + EA A   R+ K +   ALL PDA PD  N    +P
Sbjct: 690 EAEANANGQRAPKNIEMPALLNPDANPDAPNFKNLQP 726


>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 598 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYL 509
           WHS+   +  CL  + TF+ FC  + +LHY+
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYI 321


>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 598 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYL 509
           WHS+   +  CL  + TF+ FC  + +LHY+
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYI 321


>AF098999-6|AAC68724.2|  787|Caenorhabditis elegans Half transporter
           (pgp related)protein 4 protein.
          Length = 787

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -3

Query: 420 PRRWCPIKCTGPEP*TRVNVTGAS-GNSMSRRTCLDSPTFNTATGSFTA 277
           PR+   +  +GP+P   +NV G S GN+MS    L S +F+ +  S T+
Sbjct: 742 PRKRPAVARSGPQPAASINVAGPSQGNAMS----LLSTSFSQSASSVTS 786


>Z80214-5|CAJ76929.1|  916|Caenorhabditis elegans Hypothetical
           protein C27D8.3b protein.
          Length = 916

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = -3

Query: 366 NVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTVSHLIHLVWHLDLTMLD 202
           N  G  GN+  +++ ++S  F T   +F+ + +   +T  HL+      D  +LD
Sbjct: 360 NQKGTGGNTAHKKSDVNSQEFVTIPPTFSDNSNAWQTTYPHLLCTTRQKDAVLLD 414


>Z80214-4|CAB02263.1|  982|Caenorhabditis elegans Hypothetical
           protein C27D8.3a protein.
          Length = 982

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = -3

Query: 366 NVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTVSHLIHLVWHLDLTMLD 202
           N  G  GN+  +++ ++S  F T   +F+ + +   +T  HL+      D  +LD
Sbjct: 426 NQKGTGGNTAHKKSDVNSQEFVTIPPTFSDNSNAWQTTYPHLLCTTRQKDAVLLD 480


>AL132952-7|CAB61139.2|  670|Caenorhabditis elegans Hypothetical
           protein Y51H4A.7 protein.
          Length = 670

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +1

Query: 40  RVARERVAKNLNKLVKSS*RTSFSMVSPFHHHISQRHGIQRQKQNTH---AATSSSFVKH 210
           R  R  +A   N+LVKS   ++  ++S  HH +S      R+  N +   A T+   V++
Sbjct: 512 RAGRVALASAFNELVKSGKVSAAIVISRDHHDVSGTDSPFRETSNVYDGSAFTADMAVQN 571

Query: 211 C 213
           C
Sbjct: 572 C 572


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,705,420
Number of Sequences: 27780
Number of extensions: 297496
Number of successful extensions: 792
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)