Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20273
         (731 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58050.1 68416.m06471 expressed protein                             28   5.6  
At3g15620.1 68416.m01981 6-4 photolyase (UVR3) identical to 6-4 ...    27   9.7  
At1g52420.1 68414.m05917 glycosyl transferase family 1 protein c...    27   9.7  

>At3g58050.1 68416.m06471 expressed protein
          Length = 1209

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 120 TLSSSHQSETWDPEAKAEYPRSN 188
           T  S H  + W+P    +YPRSN
Sbjct: 834 TRDSLHSKQVWEPMEPKKYPRSN 856


>At3g15620.1 68416.m01981 6-4 photolyase (UVR3) identical to 6-4
           photolyase (UVR3) GB:AB003687 [Arabidopsis thaliana]
           (Nucleic Acids Res. 26 (2), 638-644 (1998))
          Length = 556

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -2

Query: 700 RVVAPSLHNLDIIIPKMATVRLAQNGSPGGLFISWHSSWAMQLCLWHYST 551
           R +  SL +LD  + K+ +  L   G PG + +     W ++   + Y T
Sbjct: 83  RFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDT 132


>At1g52420.1 68414.m05917 glycosyl transferase family 1 protein
           contains Pfam profile: PF00534 Glycosyl transferases
           group 1
          Length = 670

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
 Frame = -2

Query: 658 PKMATVRLAQNGSPGGLFISWHSS-----WAMQLCLWHYSTFSLFCPWVH 524
           P++ + R  + G  GG    W  S     W + + LW Y  F +   W H
Sbjct: 28  PRVYSGRTPRRGHGGGGAFQWFRSSRLVYWLLLITLWTYLGFYVQSRWAH 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,863,408
Number of Sequences: 28952
Number of extensions: 276496
Number of successful extensions: 641
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)