Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20272
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual             27   2.3  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    26   5.3  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   7.0  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   7.0  

>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 264

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -3

Query: 715 NRWYFAVEGWKILSSFGRSQRALQFL 638
           NRW+ A+  W+++++F  ++  L  L
Sbjct: 145 NRWFAAINKWQVMTAFELNEENLDLL 170


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/33 (30%), Positives = 23/33 (69%)
 Frame = -1

Query: 411 TSVNQTATSHSNNNEKVFFLYQTYHGNSILLFL 313
           ++++Q A+SH    +K  ++ + Y+GN+ +LF+
Sbjct: 130 STLHQGASSHKTVTKKHNWMLRLYYGNNKVLFI 162


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -3

Query: 127  LSIQSRLMNSFPNPNAVGRYTIIK*TKNNVYLLSRALMI 11
            +++   L+N FP+ N  GR  +I   ++ ++ L RA  +
Sbjct: 1514 VNMVDELLNKFPDVNFTGRIGVITPYRSQLHELRRAFKV 1552


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +2

Query: 359 KTFSLLLLCEVAVWLTEVFGRFKRTLIYRYRLV*E*TIKLLNIFYVYF 502
           KTF  LL C V ++LT V G F   ++    L+   T   L IF +YF
Sbjct: 328 KTFGSLLTCSVCLFLTYV-GGFSVHMMKTTMLI-GLTATTLIIFILYF 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,133,942
Number of Sequences: 5004
Number of extensions: 65120
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)