Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20272
         (786 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9417| Best HMM Match : FragX_IP (HMM E-Value=0)                     30   2.4  
SB_40038| Best HMM Match : zf-ZPR1 (HMM E-Value=6.2e-23)               28   9.9  

>SB_9417| Best HMM Match : FragX_IP (HMM E-Value=0)
          Length = 875

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 249 PRINKLNGGLHFRATQNSDFFQEIAILNY 335
           P INKL G +HF  T  + F QE+  L++
Sbjct: 71  PEINKLKGFMHFAMTVVTRFCQEVKTLSH 99


>SB_40038| Best HMM Match : zf-ZPR1 (HMM E-Value=6.2e-23)
          Length = 406

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 658 ASAQKRIISSSLLLQSTNGSRVKVKISFIPGLLWLPHD 771
           AS + +I+  SLL Q+  GS +  K+  +P     PH+
Sbjct: 181 ASLKIKILQDSLLKQTKKGSNIPNKLQLLPSPYRDPHE 218


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,727,206
Number of Sequences: 59808
Number of extensions: 423412
Number of successful extensions: 624
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)