Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20271
         (690 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    26   0.33 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   1.0  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    23   3.1  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   7.2  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   7.2  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -3

Query: 418 YALYFFLCMQIFFLQVSLFILNVLFLYF*EL*HSLEFLVLCV*IFRFEFI 269
           YA    LC+  F+    +F +++LFL          F +LC+  F   FI
Sbjct: 105 YAFIILLCVYYFYYAFIIFTVHLLFLLCIYYFVVPLFFLLCIYYFYCAFI 154



 Score = 25.4 bits (53), Expect = 0.44
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 412 LYFFLCMQIFFLQVSLFILNVLFL 341
           L+F LC+  F+    +F +++LFL
Sbjct: 140 LFFLLCIYYFYCAFIIFTVHLLFL 163



 Score = 25.0 bits (52), Expect = 0.58
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -3

Query: 421 LYALYFFLCMQIFFLQVSLFILNVLFLYF*EL*HSLEFLVLCV*IF 284
           L  +Y+F C  I F    LF+L +   +   +  ++  L  C  IF
Sbjct: 143 LLCIYYFYCAFIIFTVHLLFLLCIYHFFCAFIIFTMHLLFCCAFIF 188



 Score = 21.8 bits (44), Expect = 5.4
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 493 SGAANYACILINCLKKLSNDKRNRLYALYFFLCMQIFFLQVSLFIL 356
           SGA+    IL + + K  N +R     +Y+F C+ I F    LF+L
Sbjct: 34  SGASLQVGILDSLVFKCYNLRR-----IYYFYCVSITFNVHLLFLL 74


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 475 HSWQHHWLKLLFRILSTIDRELLKPSASVAL 567
           H W H W+ LL   L  I   +++    VAL
Sbjct: 542 HVWIHPWIPLLDTRLQAIIYPIIQEKLGVAL 572


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +1

Query: 415 HTVCSSCHWTVS*GS*SKYRHSWQH 489
           HT CS C  T   GS    RH   H
Sbjct: 72  HTECSKCSETQKNGSKKIMRHLIDH 96


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 204 NNSNLFHCFYS*ENS 160
           +N N FH FYS E+S
Sbjct: 475 DNYNSFHQFYSSESS 489


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 204 NNSNLFHCFYS*ENS 160
           +N N FH FYS E+S
Sbjct: 423 DNYNSFHQFYSSESS 437


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,840
Number of Sequences: 336
Number of extensions: 3276
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)