Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20271
(690 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 112 4e-26
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 45 1e-05
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 38 0.002
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 37 0.002
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 36 0.006
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac... 34 0.022
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 29 0.84
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.9
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha... 27 1.9
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 27 1.9
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 27 3.4
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 26 4.5
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce... 26 4.5
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 26 5.9
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 26 5.9
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 25 7.8
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 25 7.8
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 7.8
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 25 7.8
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 7.8
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma... 25 7.8
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 112 bits (270), Expect = 4e-26
Identities = 52/76 (68%), Positives = 65/76 (85%)
Frame = +2
Query: 278 ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEA 457
E DLY ++K L+R LE L++QE +IK++ ++LK+E + AQEEVKRIQSVPLVIGQFLEA
Sbjct: 5 EEIDLYNRWKALERQLEMLDLQEGFIKEDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEA 64
Query: 458 VDQNTGIVGSTTGSNY 505
+DQNT IVGSTTGSNY
Sbjct: 65 IDQNTAIVGSTTGSNY 80
Score = 92.7 bits (220), Expect = 5e-20
Identities = 43/51 (84%), Positives = 48/51 (94%)
Frame = +1
Query: 511 RILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQY 663
RILST+DRELLKPSASVAL +HSNALVD+LPPEADSSISML+ DE+PDV Y
Sbjct: 83 RILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDVSY 133
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 44.8 bits (101), Expect = 1e-05
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Frame = +2
Query: 308 KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEE---VKRIQSVPLVIGQFLEAVDQNTGI 478
K+QR+ + L ++EEY+++++R LK + QEE V I+ P+ +G E +D + I
Sbjct: 71 KMQRIHDHLLMEEEYVQNQER-LKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDDHAI 129
Query: 479 VGSTTGSNYY 508
V ST G YY
Sbjct: 130 V-STAGPEYY 138
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 37.5 bits (83), Expect = 0.002
Identities = 20/76 (26%), Positives = 40/76 (52%)
Frame = +2
Query: 278 ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEA 457
E + KYK + + + ++ R+L K+Y ++++K +QSV +IG+ L+
Sbjct: 3 ERDTALEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQ 62
Query: 458 VDQNTGIVGSTTGSNY 505
+D IV +++G Y
Sbjct: 63 LDSERFIVKASSGPRY 78
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/55 (32%), Positives = 30/55 (54%)
Frame = +1
Query: 499 KLLFRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQY 663
K + I ID + +KP+ VAL S L+ +LP + D +S++ ++ PD Y
Sbjct: 90 KYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPDSTY 144
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 35.9 bits (79), Expect = 0.006
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1
Query: 559 VALHKHSNALVDVLPPEADSSISMLQADEKPDVQY 663
V ++ A+ LPP+ D S++M+Q +EKPDV Y
Sbjct: 144 VGCDRNKYAIQLPLPPKIDPSVTMMQVEEKPDVTY 178
>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
Alg6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 506
Score = 33.9 bits (74), Expect = 0.022
Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = -3
Query: 535 LYQLLREYGIII*ASGAANYACILINCLK-KLSNDKRNRLYALYFFLCMQIFFLQVSLFI 359
L +L + +++ G Y C+++ + ++N +N+ A FF C+ + F Q++L+
Sbjct: 167 LIMVLFQPALLLIDHGHFQYNCVMLGLVMYAIANLLKNQYVAATFFFCLALTFKQMALYF 226
Query: 358 LNVLFLY 338
+F Y
Sbjct: 227 APPIFFY 233
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 28.7 bits (61), Expect = 0.84
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = +2
Query: 182 QWKRLELFYPRKMTKSQTQKAWRLRSSIFD-ELESEDL-YTKYKKLQRMLEFLEVQEEYI 355
Q K EL RK+ + QTQ + +LR + ELE +DL + E Q + +
Sbjct: 512 QNKEEELTELRKLLREQTQDSQKLRLLVEQLELERQDLKQAGENHYSNLSSDYETQIKSL 571
Query: 356 KDEQRNLKKEYLHAQEEVKRIQS 424
+ N + E + QE++ + S
Sbjct: 572 ESSLTNSQAECVSFQEKINELNS 594
>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 608
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 544 KPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQY 663
KPS++V+ S+A DV+ + S+I+ D K DV +
Sbjct: 244 KPSSNVSRGTPSSAHSDVIEISSSSAIARTSGDRKDDVLF 283
>SPBC32H8.09 |||WD repeat protein, human WDR8
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -1
Query: 411 FTSSCACKYSFFKFRCSSLMYSSCTSKNSNILW 313
F C S +F C ++ TSK N+LW
Sbjct: 313 FPEPSFCSASKIRFNCDETYAATITSKYPNVLW 345
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 487 HHWLKLLFRILSTIDRELLKPSASVALHKHSNAL-VDVLPPEADSSIS 627
H+WL+ +F ILS D L S+A L + LP D S+S
Sbjct: 838 HNWLETMFEILSIADELLFLELKSIAQQSLLRFLNLKTLPTLMDLSLS 885
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 26.6 bits (56), Expect = 3.4
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 403 RSKAHTVCSSCHWTVS*GS*SKYRHSWQHHWLKLLFR-ILSTIDRELLKPSASVAL 567
R K V H ++ G+ + H HH L LFR I T + +L K S+SV+L
Sbjct: 684 RLKYSAVGLENHLSIQQGAQYAFLHLAYHHTLMWLFRSIGETENNQLSKISSSVSL 739
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 377 KKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGI 478
K ++ A E+ + VPL +F + VDQN G+
Sbjct: 51 KSKHSEAVVEILKSAKVPLKNKEFSDLVDQNIGV 84
>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 26.2 bits (55), Expect = 4.5
Identities = 19/76 (25%), Positives = 36/76 (47%)
Frame = +2
Query: 197 ELFYPRKMTKSQTQKAWRLRSSIFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNL 376
E+F K +Q A + + +L ++ + Y KL R+ + V++ K+ +NL
Sbjct: 56 EVFLQPKFFDNQNFDAQSYLNDVLQDLSEDEFVSLYNKLLRI--HMGVRKNLEKNFYKNL 113
Query: 377 KKEYLHAQEEVKRIQS 424
EY+ EV+ + S
Sbjct: 114 -NEYVFISGEVESMTS 128
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/55 (21%), Positives = 30/55 (54%)
Frame = +2
Query: 254 RSSIFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRI 418
R ++ + E D+ + +K + L+ + E ++D RN+ E + +++E+K +
Sbjct: 116 RDALNTKQEHLDIKKRLEKSDETVCKLKEENENLQDMLRNVGNELVESRDEIKEL 170
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -3
Query: 421 LYALYFFLCMQIFFLQVSLFILNVLFL 341
+++L+FFLCM+ FF +++ LFL
Sbjct: 360 IFSLFFFLCMRNFFPGFTIY-FPALFL 385
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +2
Query: 206 YPRKMTKSQTQKAWRLRSSIFDELESEDLYTKYKKLQR 319
Y RK+ + + + + S+F E E++D KK++R
Sbjct: 124 YQRKLEELKKEIEYAKTKSLFHEREAQDAIETMKKMKR 161
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 532 YQLLREYGIII*ASGAANYACILINCLKKLSNDKRNR 422
Y + ++G ++ S N A +L CL+ L DK+NR
Sbjct: 210 YGPISKFGALMTRSSTGNSA-LLETCLEWLKEDKKNR 245
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 407 VKRIQSVPLVIGQFLEAVDQN 469
+K+ +SVP + GQF+E V+ N
Sbjct: 193 LKKSKSVPRLRGQFMEPVEHN 213
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 284 EDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQS 424
E+ + QR +E QEE IK+E+ ++E +EEV +S
Sbjct: 333 EEAVKSLPETQRTTSRIETQEEEIKEEEMEGEEE--EEEEEVPNYES 377
>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 231
Score = 25.4 bits (53), Expect = 7.8
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +3
Query: 93 SSTTLCLCVRHISDSQIIIR*YT 161
+ T+ C RH+ SQ++I+ Y+
Sbjct: 93 NKTSAVFCKRHVGSSQVVIKIYS 115
>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 421 LYALYFFLCMQIFFLQVSLFILNVL 347
LYAL + IF L VSLF++N++
Sbjct: 224 LYALGYGRLFGIFVLCVSLFLVNII 248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,664,484
Number of Sequences: 5004
Number of extensions: 53160
Number of successful extensions: 187
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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