Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20271
(690 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome regu... 113 9e-26
AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome re... 41 7e-04
AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome re... 40 0.002
AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome re... 35 0.048
AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome re... 35 0.048
AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical ... 34 0.11
AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical ... 34 0.11
Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical pr... 33 0.19
AF024492-4|AAF98617.1| 848|Caenorhabditis elegans Hypothetical ... 32 0.34
Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical pr... 31 0.78
Z75550-10|CAA99927.2| 444|Caenorhabditis elegans Hypothetical p... 29 2.4
U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p... 29 3.1
U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p... 29 3.1
U55854-8|AAK68159.1| 131|Caenorhabditis elegans Hypothetical pr... 29 3.1
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p... 29 3.1
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p... 29 3.1
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p... 29 3.1
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p... 29 3.1
AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical... 29 3.1
AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin... 29 3.1
AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr... 29 3.1
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr... 29 3.1
Z22176-13|CAO82058.1| 1185|Caenorhabditis elegans Hypothetical p... 29 4.1
Z22176-10|CAD45611.1| 1157|Caenorhabditis elegans Hypothetical p... 29 4.1
Z22176-9|CAA80140.1| 1139|Caenorhabditis elegans Hypothetical pr... 29 4.1
U41010-5|AAV28334.1| 975|Caenorhabditis elegans Hypothetical pr... 29 4.1
U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical pr... 29 4.1
AF424978-1|AAL23934.1| 1157|Caenorhabditis elegans UNC-16 protein. 29 4.1
U80452-5|AAB37859.1| 180|Caenorhabditis elegans Hypothetical pr... 28 5.5
U64833-1|AAB04814.1| 857|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z81140-2|CAB03486.1| 581|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical pr... 28 7.2
X70835-1|CAA50183.1| 581|Caenorhabditis elegans Cytoplasmic int... 28 7.2
AF025458-1|AAB70977.2| 384|Caenorhabditis elegans Hypothetical ... 28 7.2
Z83731-9|CAH10802.1| 1364|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z83731-8|CAH10801.1| 1490|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z81505-5|CAH10795.1| 1364|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z81505-4|CAH10794.1| 1490|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr... 27 9.6
U80023-2|AAG24035.1| 204|Caenorhabditis elegans Hypothetical pr... 27 9.6
AF016424-1|AAB65331.2| 617|Caenorhabditis elegans Hypothetical ... 27 9.6
>U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 3 protein.
Length = 414
Score = 113 bits (273), Expect = 9e-26
Identities = 57/76 (75%), Positives = 61/76 (80%)
Frame = +2
Query: 281 SEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAV 460
S D Y K L+R L L+V E+YIK E RNL+KE LHAQEEVKRIQSVPLVIGQFLEAV
Sbjct: 33 SSDDYIKLTTLERQLAHLQVMEDYIKLETRNLEKELLHAQEEVKRIQSVPLVIGQFLEAV 92
Query: 461 DQNTGIVGSTTGSNYY 508
DQN IVGSTTGSNYY
Sbjct: 93 DQNHAIVGSTTGSNYY 108
Score = 88.2 bits (209), Expect = 5e-18
Identities = 40/51 (78%), Positives = 45/51 (88%)
Frame = +1
Query: 511 RILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQY 663
R+LS +DRELLKP SVALHK+SNALVDVLPPEADSSI ML+ DEKPD+ Y
Sbjct: 110 RVLSILDRELLKPGCSVALHKYSNALVDVLPPEADSSIQMLRPDEKPDISY 160
>AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 5 protein.
Length = 430
Score = 41.1 bits (92), Expect = 7e-04
Identities = 17/50 (34%), Positives = 30/50 (60%)
Frame = +1
Query: 514 ILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQY 663
++ +D + LKP V ++K S +++ LP E DS + ++ DE+P QY
Sbjct: 127 VVGLVDPDELKPGDLVGVNKDSYLILEKLPAEYDSRVKAMEVDERPTEQY 176
>AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 2 protein.
Length = 443
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/50 (32%), Positives = 32/50 (64%)
Frame = +1
Query: 514 ILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQY 663
I+S +D+E L+P SV L+ ++A++ VL + D +S+++ ++ P Y
Sbjct: 138 IMSFVDKEQLEPGCSVLLNHKNHAVIGVLSDDTDPMVSVMKLEKAPQETY 187
>AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform b
protein.
Length = 398
Score = 35.1 bits (77), Expect = 0.048
Identities = 17/82 (20%), Positives = 47/82 (57%)
Frame = +2
Query: 260 SIFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVI 439
+I ++ ++ L + +KL + +E + + ++ ++ + K++ ++ ++K +QSV ++
Sbjct: 8 AIVEDERTKALNSYRRKLAECRD-IEQKLKDLRKKESEMTKQFDKSENDIKSLQSVGQIV 66
Query: 440 GQFLEAVDQNTGIVGSTTGSNY 505
G+ L+ + + IV +T G Y
Sbjct: 67 GEVLKQLSEEKFIVKATNGPRY 88
>AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform a
protein.
Length = 406
Score = 35.1 bits (77), Expect = 0.048
Identities = 17/82 (20%), Positives = 47/82 (57%)
Frame = +2
Query: 260 SIFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVI 439
+I ++ ++ L + +KL + +E + + ++ ++ + K++ ++ ++K +QSV ++
Sbjct: 16 AIVEDERTKALNSYRRKLAECRD-IEQKLKDLRKKESEMTKQFDKSENDIKSLQSVGQIV 74
Query: 440 GQFLEAVDQNTGIVGSTTGSNY 505
G+ L+ + + IV +T G Y
Sbjct: 75 GEVLKQLSEEKFIVKATNGPRY 96
>AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical
protein F56F11.4a protein.
Length = 411
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +1
Query: 499 KLLFRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQY 663
K + + +++D L VAL + A+ +VLP + D +S++ ++ PD Y
Sbjct: 99 KYIVDVAASVDISTLAAGTRVALRADNYAIHEVLPSKVDPLVSLMMVEKVPDSTY 153
>AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical
protein F56F11.4b protein.
Length = 432
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +1
Query: 499 KLLFRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQY 663
K + + +++D L VAL + A+ +VLP + D +S++ ++ PD Y
Sbjct: 120 KYIVDVAASVDISTLAAGTRVALRADNYAIHEVLPSKVDPLVSLMMVEKVPDSTY 174
>Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical
protein Y49E10.1 protein.
Length = 416
Score = 33.1 bits (72), Expect = 0.19
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +1
Query: 499 KLLFRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQY 663
K + + +ID L A VAL S AL +LP + D +S++ ++ PD Y
Sbjct: 104 KYVVDVDKSIDINSLNTGARVALRADSYALHKLLPNKVDPLVSLMMVEKVPDSTY 158
>AF024492-4|AAF98617.1| 848|Caenorhabditis elegans Hypothetical
protein F14F9.3 protein.
Length = 848
Score = 32.3 bits (70), Expect = 0.34
Identities = 21/88 (23%), Positives = 46/88 (52%)
Frame = +2
Query: 194 LELFYPRKMTKSQTQKAWRLRSSIFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRN 373
L L + K K +++K+ SS F+ +E E L TKY L + EFL+ + +++
Sbjct: 230 LSLCFVEKRNK-KSRKSKISESSAFEVIEKEKLVTKYTSLLNIQEFLKTEGYTLENADII 288
Query: 374 LKKEYLHAQEEVKRIQSVPLVIGQFLEA 457
K + ++++++++ +I + L +
Sbjct: 289 FKNMEVKFEKQMEQLREDETLITKRLRS 316
>Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical
protein C52E4.4 protein.
Length = 435
Score = 31.1 bits (67), Expect = 0.78
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 598 LPPEADSSISMLQADEKPDVQY 663
LP + D +++M+Q +EKPDV Y
Sbjct: 155 LPAKIDPTVTMMQVEEKPDVTY 176
>Z75550-10|CAA99927.2| 444|Caenorhabditis elegans Hypothetical
protein T22C1.11 protein.
Length = 444
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/63 (25%), Positives = 33/63 (52%)
Frame = +2
Query: 338 VQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYSVF 517
V+EE + E+ ++ KEY A + V +++ + LV+G + D + + S S+
Sbjct: 216 VEEEVAQIEEEDVSKEYFDASKFVAQLEEMGLVLGVMTPSNDTGSPMFEIKQKSPEESIS 275
Query: 518 SQQ 526
S++
Sbjct: 276 SEE 278
>U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated
protein 70, isoform a protein.
Length = 2257
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +2
Query: 287 DLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQS 424
++ K + + +++E EE DE N+K L QE+++R+Q+
Sbjct: 1418 EMIKKAQHIDQLMEMEPQLEELHPDELENIKAHRLAVQEQLQRLQA 1463
>U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated
protein 70, isoform b protein.
Length = 2302
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +2
Query: 287 DLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQS 424
++ K + + +++E EE DE N+K L QE+++R+Q+
Sbjct: 1418 EMIKKAQHIDQLMEMEPQLEELHPDELENIKAHRLAVQEQLQRLQA 1463
>U55854-8|AAK68159.1| 131|Caenorhabditis elegans Hypothetical
protein C04G6.11 protein.
Length = 131
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -3
Query: 460 NCLKKLSNDKRNRLYALYFFLCMQIFFLQVSLFILNVLFL 341
+CLKK S + + FF C+ FFL S+F L + +L
Sbjct: 89 DCLKK-SRRRLLSIKFFVFFFCLLPFFLSSSIFFLYLFYL 127
>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
protein F35D11.11a protein.
Length = 1840
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 317 RMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQ 421
RM E ++ E + +E LK ++LH +EEV+R++
Sbjct: 822 RMNELTKIHE-MLMEEHDQLKVDHLHTEEEVERLK 855
>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
protein F35D11.11c protein.
Length = 1898
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 317 RMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQ 421
RM E ++ E + +E LK ++LH +EEV+R++
Sbjct: 822 RMNELTKIHE-MLMEEHDQLKVDHLHTEEEVERLK 855
>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
protein F35D11.11d protein.
Length = 1671
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 317 RMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQ 421
RM E ++ E + +E LK ++LH +EEV+R++
Sbjct: 582 RMNELTKIHE-MLMEEHDQLKVDHLHTEEEVERLK 615
>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
protein F35D11.11b protein.
Length = 1911
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 317 RMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQ 421
RM E ++ E + +E LK ++LH +EEV+R++
Sbjct: 822 RMNELTKIHE-MLMEEHDQLKVDHLHTEEEVERLK 855
>AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical
protein Y39B6A.30 protein.
Length = 1408
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +2
Query: 248 RLRSSIFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKK--EYLHAQEEVKRIQ 421
R R E E+E+ K ++ +E ++ +EE +K E+ +KK E L A+EE +++
Sbjct: 881 RRREEKCKEKEAEEENEKLIPERKRMEAIKEEEERVKAEREKVKKEEERLKAEEEKVKVE 940
>AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin
protein.
Length = 2257
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +2
Query: 287 DLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQS 424
++ K + + +++E EE DE N+K L QE+++R+Q+
Sbjct: 1418 EMIKKAQHIDQLMEMEPQLEELHPDELENIKAHRLAVQEQLQRLQA 1463
>AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2257
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +2
Query: 287 DLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQS 424
++ K + + +++E EE DE N+K L QE+++R+Q+
Sbjct: 1418 EMIKKAQHIDQLMEMEPQLEELHPDELENIKAHRLAVQEQLQRLQA 1463
>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2302
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +2
Query: 287 DLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQS 424
++ K + + +++E EE DE N+K L QE+++R+Q+
Sbjct: 1418 EMIKKAQHIDQLMEMEPQLEELHPDELENIKAHRLAVQEQLQRLQA 1463
>Z22176-13|CAO82058.1| 1185|Caenorhabditis elegans Hypothetical
protein ZK1098.10d protein.
Length = 1185
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +2
Query: 269 DELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQ--RNLKKEYLHAQEEVKRIQSVPLVI 439
DEL SE++ + + L R + ++QE+ K E+ + LK++ + + E + VP+ +
Sbjct: 365 DELNSENMILRDENLSRQMVSEKMQEQITKHEEEIKTLKQKLMEKENEQEE-DDVPMAM 422
>Z22176-10|CAD45611.1| 1157|Caenorhabditis elegans Hypothetical
protein ZK1098.10b protein.
Length = 1157
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +2
Query: 269 DELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQ--RNLKKEYLHAQEEVKRIQSVPLVI 439
DEL SE++ + + L R + ++QE+ K E+ + LK++ + + E + VP+ +
Sbjct: 365 DELNSENMILRDENLSRQMVSEKMQEQITKHEEEIKTLKQKLMEKENEQEE-DDVPMAM 422
>Z22176-9|CAA80140.1| 1139|Caenorhabditis elegans Hypothetical
protein ZK1098.10a protein.
Length = 1139
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +2
Query: 269 DELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQ--RNLKKEYLHAQEEVKRIQSVPLVI 439
DEL SE++ + + L R + ++QE+ K E+ + LK++ + + E + VP+ +
Sbjct: 347 DELNSENMILRDENLSRQMVSEKMQEQITKHEEEIKTLKQKLMEKENEQEE-DDVPMAM 404
>U41010-5|AAV28334.1| 975|Caenorhabditis elegans Hypothetical
protein T05A12.4b protein.
Length = 975
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 426 TDCMRFTSSCACKYSFFKFRCSSLMYSSCTSKNSN 322
++C + S+ C + F KF+ S CTS++ N
Sbjct: 389 SNCSQMCSAKICGWDFDKFKNEKFQCSKCTSESEN 423
>U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical
protein T05A12.4a protein.
Length = 1622
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 426 TDCMRFTSSCACKYSFFKFRCSSLMYSSCTSKNSN 322
++C + S+ C + F KF+ S CTS++ N
Sbjct: 389 SNCSQMCSAKICGWDFDKFKNEKFQCSKCTSESEN 423
>AF424978-1|AAL23934.1| 1157|Caenorhabditis elegans UNC-16 protein.
Length = 1157
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +2
Query: 269 DELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQ--RNLKKEYLHAQEEVKRIQSVPLVI 439
DEL SE++ + + L R + ++QE+ K E+ + LK++ + + E + VP+ +
Sbjct: 365 DELNSENMILRDENLSRQMVSEKMQEQITKHEEEIKTLKQKLMEKENEQEE-DDVPMAM 422
>U80452-5|AAB37859.1| 180|Caenorhabditis elegans Hypothetical
protein C16C8.5 protein.
Length = 180
Score = 28.3 bits (60), Expect = 5.5
Identities = 19/63 (30%), Positives = 33/63 (52%)
Frame = +2
Query: 191 RLELFYPRKMTKSQTQKAWRLRSSIFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQR 370
RLE +P T + Q ++S + LE + + K+LQ++ E +++ IK+E
Sbjct: 15 RLESKFPNGSTLVENQLLLDVKSLCAELLEEQK--SLKKRLQKVEENQKIENAKIKEELE 72
Query: 371 NLK 379
NLK
Sbjct: 73 NLK 75
>U64833-1|AAB04814.1| 857|Caenorhabditis elegans Hypothetical
protein B0507.6 protein.
Length = 857
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/56 (30%), Positives = 33/56 (58%)
Frame = +2
Query: 257 SSIFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQS 424
SSI + E D T KKLQ E +++ E K E+ N K+++ ++E++++++
Sbjct: 460 SSIQHDTEEIDDSTFKKKLQEQSERNKIELEKKKQERMNKKRKF---EDEIRKLKN 512
>Z81140-2|CAB03486.1| 581|Caenorhabditis elegans Hypothetical
protein W10G6.3 protein.
Length = 581
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +2
Query: 269 DELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQ 421
D L+ +DL L+ + L+ + +++E LKKE E++R++
Sbjct: 170 DRLKIDDLLVTLSNLEAEINLLKRRIALLEEEVARLKKENFRLTSELQRVR 220
>Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical
protein C23H4.6 protein.
Length = 1137
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Frame = +2
Query: 305 KKLQRMLEFLEVQEEYIKDEQR---NLKKEYLHAQEEVKRIQS 424
KKLQ + + +EVQ+E IK+ + NL+K + E+K +S
Sbjct: 324 KKLQELRDEVEVQDEEIKESRADVDNLRKIVNDLKHEIKMSES 366
>X70835-1|CAA50183.1| 581|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 581
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +2
Query: 269 DELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQ 421
D L+ +DL L+ + L+ + +++E LKKE E++R++
Sbjct: 170 DRLKIDDLLVTLSNLEAEINLLKRRIALLEEEVARLKKENFRLTSELQRVR 220
>AF025458-1|AAB70977.2| 384|Caenorhabditis elegans Hypothetical
protein C01B12.4 protein.
Length = 384
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -3
Query: 454 LKKLSNDK-RNRLYALYFFLCMQIFFLQVSLFILN-VLFLY 338
LK +SN++ RN +YAL F + F V +FI +FLY
Sbjct: 59 LKYVSNERIRNDMYALIFMFPITTFASLVGMFIPRAAIFLY 99
>Z83731-9|CAH10802.1| 1364|Caenorhabditis elegans Hypothetical protein
F16A11.3b protein.
Length = 1364
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +1
Query: 472 RHSWQHHWLKLLFRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISM-LQADEK 648
R +W LKL+FR L+ ++ ++ S S ++H+ +N L + E + L+ D+
Sbjct: 858 RAAWPR--LKLVFRKLAMDEQARVRQSISHSIHEIANMLGQEITDEDLLPVFYDLRNDQN 915
Query: 649 PDVQ 660
PDV+
Sbjct: 916 PDVR 919
>Z83731-8|CAH10801.1| 1490|Caenorhabditis elegans Hypothetical protein
F16A11.3a protein.
Length = 1490
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +1
Query: 472 RHSWQHHWLKLLFRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISM-LQADEK 648
R +W LKL+FR L+ ++ ++ S S ++H+ +N L + E + L+ D+
Sbjct: 984 RAAWPR--LKLVFRKLAMDEQARVRQSISHSIHEIANMLGQEITDEDLLPVFYDLRNDQN 1041
Query: 649 PDVQ 660
PDV+
Sbjct: 1042 PDVR 1045
>Z81505-5|CAH10795.1| 1364|Caenorhabditis elegans Hypothetical protein
F16A11.3b protein.
Length = 1364
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +1
Query: 472 RHSWQHHWLKLLFRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISM-LQADEK 648
R +W LKL+FR L+ ++ ++ S S ++H+ +N L + E + L+ D+
Sbjct: 858 RAAWPR--LKLVFRKLAMDEQARVRQSISHSIHEIANMLGQEITDEDLLPVFYDLRNDQN 915
Query: 649 PDVQ 660
PDV+
Sbjct: 916 PDVR 919
>Z81505-4|CAH10794.1| 1490|Caenorhabditis elegans Hypothetical protein
F16A11.3a protein.
Length = 1490
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +1
Query: 472 RHSWQHHWLKLLFRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISM-LQADEK 648
R +W LKL+FR L+ ++ ++ S S ++H+ +N L + E + L+ D+
Sbjct: 984 RAAWPR--LKLVFRKLAMDEQARVRQSISHSIHEIANMLGQEITDEDLLPVFYDLRNDQN 1041
Query: 649 PDVQ 660
PDV+
Sbjct: 1042 PDVR 1045
>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
protein E01G6.1 protein.
Length = 1391
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -1
Query: 447 NCPMTRGTDCMRFTSSCACKYSFFKFRCSSLMYSSC 340
N M+RG C T Y K +CS +Y+ C
Sbjct: 467 NANMSRGNGCKGSTQRSMWFYDKSKKKCSQFVYNGC 502
>U80023-2|AAG24035.1| 204|Caenorhabditis elegans Hypothetical
protein F07C4.6 protein.
Length = 204
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -1
Query: 483 PTMPVF*STASRNCPMTRGTDCMRFTSSCACKYSFFKFRCSSLMYSSCTS 334
PT + A +CP T G C T SC F + C+S+ + C S
Sbjct: 88 PTSKDAKTAAIAHCPKTCGLCCQTSTYSCQ-NAPFPRLNCASVTKAMCLS 136
>AF016424-1|AAB65331.2| 617|Caenorhabditis elegans Hypothetical
protein F39G3.6 protein.
Length = 617
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 76 VPSYYLVILILSFFLKLQFNDF 11
+P YYLVIL+ L++ + DF
Sbjct: 83 LPVYYLVILVTVILLRIYYEDF 104
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,624,889
Number of Sequences: 27780
Number of extensions: 296599
Number of successful extensions: 1085
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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