Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20271
(690 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 128 5e-30
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 48 8e-06
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 48 8e-06
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 44 1e-04
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 43 2e-04
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 40 0.001
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 40 0.002
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 34 0.077
At1g65540.1 68414.m07435 calcium-binding EF hand family protein ... 34 0.10
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 33 0.14
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 33 0.18
At4g14760.1 68417.m02271 M protein repeat-containing protein con... 33 0.24
At3g54670.1 68416.m06049 structural maintenance of chromosomes (... 31 0.54
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 31 0.54
At1g03080.1 68414.m00282 kinase interacting family protein simil... 31 0.54
At5g65685.1 68418.m08268 soluble glycogen synthase-related conta... 30 1.7
At3g59820.1 68416.m06675 calcium-binding mitochondrial protein-r... 30 1.7
At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical ... 29 2.2
At5g40540.1 68418.m04920 protein kinase, putative similar to pro... 29 2.2
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro... 29 2.9
At1g47760.1 68414.m05311 MADS-box protein (AGL102) contains simi... 29 2.9
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela... 29 2.9
At5g58005.1 68418.m07257 expressed protein 29 3.8
At3g44050.1 68416.m04718 kinesin motor protein-related KLP2 prot... 29 3.8
At3g19670.1 68416.m02492 FF domain-containing protein / WW domai... 29 3.8
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela... 28 5.1
At3g19050.1 68416.m02420 kinesin motor protein-related contains ... 28 5.1
At1g77890.1 68414.m09078 expressed protein 28 5.1
At5g55490.1 68418.m06911 expressed protein 28 6.7
At2g41880.1 68415.m05179 guanylate kinase 1 (GK-1) identical to ... 28 6.7
At2g25670.2 68415.m03077 expressed protein 28 6.7
At2g25670.1 68415.m03076 expressed protein 28 6.7
At1g29000.1 68414.m03546 heavy-metal-associated domain-containin... 28 6.7
At1g07750.1 68414.m00837 cupin family protein similar to legumin... 28 6.7
At5g41620.1 68418.m05057 expressed protein weak similarity to mi... 27 8.9
At5g32169.1 68418.m03692 hypothetical protein 27 8.9
At3g19520.1 68416.m02475 expressed protein contains Pfam profile... 27 8.9
At1g58120.1 68414.m06589 expressed protein 27 8.9
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 128 bits (308), Expect = 5e-30
Identities = 58/77 (75%), Positives = 67/77 (87%)
Frame = +2
Query: 278 ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEA 457
+ EDLY + K L+R LEF ++QEEY+KDEQ+NLK+E L AQEEVKRIQSVPLVIGQF+E
Sbjct: 26 DEEDLYGRLKSLERQLEFTDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM 85
Query: 458 VDQNTGIVGSTTGSNYY 508
VDQN GIVGSTTGSNYY
Sbjct: 86 VDQNNGIVGSTTGSNYY 102
Score = 92.3 bits (219), Expect = 3e-19
Identities = 44/51 (86%), Positives = 47/51 (92%)
Frame = +1
Query: 511 RILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQY 663
RILSTI+RELLKPSASVALH+HSNALVDVLPPEADSSIS+L EKPDV Y
Sbjct: 104 RILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVSY 154
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 47.6 bits (108), Expect = 8e-06
Identities = 23/70 (32%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Frame = +2
Query: 308 KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEE---VKRIQSVPLVIGQFLEAVDQNTGI 478
KL+R+ ++L ++EE++ +++R LK + A+E+ V ++ P+ +G E +D+N I
Sbjct: 67 KLERIKDYLLMEEEFVANQER-LKPQEEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAI 125
Query: 479 VGSTTGSNYY 508
V S+ G YY
Sbjct: 126 VSSSVGPEYY 135
Score = 37.5 bits (83), Expect = 0.008
Identities = 15/50 (30%), Positives = 30/50 (60%)
Frame = +1
Query: 514 ILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQY 663
ILS +D++ L+P S+ +H ++V +L E D +S+++ ++ P Y
Sbjct: 138 ILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESY 187
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 47.6 bits (108), Expect = 8e-06
Identities = 23/70 (32%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Frame = +2
Query: 308 KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEE---VKRIQSVPLVIGQFLEAVDQNTGI 478
KL+R+ ++L ++EE++ +++R LK + A+E+ V ++ P+ +G E +D+N I
Sbjct: 67 KLERIKDYLLMEEEFVANQER-LKPQEEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAI 125
Query: 479 VGSTTGSNYY 508
V S+ G YY
Sbjct: 126 VSSSVGPEYY 135
Score = 37.5 bits (83), Expect = 0.008
Identities = 15/50 (30%), Positives = 30/50 (60%)
Frame = +1
Query: 514 ILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQY 663
ILS +D++ L+P S+ +H ++V +L E D +S+++ ++ P Y
Sbjct: 138 ILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESY 187
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +1
Query: 514 ILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQY 663
++ +D + LKP V ++K S ++D LP E DS + ++ DEKP Y
Sbjct: 120 VVGLVDPDTLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDY 169
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +1
Query: 514 ILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQY 663
++ +D + LKP V ++K S ++D LP E DS + ++ DEKP Y
Sbjct: 121 VVGLVDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDY 170
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/70 (28%), Positives = 39/70 (55%)
Frame = +2
Query: 296 TKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTG 475
++Y+K + LE + ++ R KKE+ ++++K +QSV +IG+ L +D
Sbjct: 16 SEYRKKLLQHKELESRVRTARENLRGAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERL 75
Query: 476 IVGSTTGSNY 505
IV +++G Y
Sbjct: 76 IVKASSGPRY 85
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/70 (30%), Positives = 38/70 (54%)
Frame = +2
Query: 296 TKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTG 475
T Y+K + LE + ++ R KKE+ ++++K +QSV +IG+ L +D
Sbjct: 16 TDYRKKLLHHKELESRVRTARENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERL 75
Query: 476 IVGSTTGSNY 505
IV +++G Y
Sbjct: 76 IVKASSGPRY 85
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 34.3 bits (75), Expect = 0.077
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +1
Query: 499 KLLFRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQY 663
K + I +ID L PS VAL S L VLP + D +++++ ++ PD Y
Sbjct: 106 KYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTY 160
>At1g65540.1 68414.m07435 calcium-binding EF hand family protein
similar to leucine zipper-EF-hand containing
transmembrane protein 1 [Homo sapiens] GI:4235226;
contains Pfam profile PF00036: EF hand
Length = 736
Score = 33.9 bits (74), Expect = 0.10
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +2
Query: 275 LESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPL 433
L SED ++ K R LE+LE+QEE IK+E+ ++E +E + V L
Sbjct: 485 LSSEDSVSERK---RKLEYLEMQEELIKEEEEEEEEEMAKMKESASSQKDVAL 534
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 33.5 bits (73), Expect = 0.14
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +1
Query: 499 KLLFRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQY 663
K + I +ID + PS VAL S L VLP + D +++++ ++ PD Y
Sbjct: 106 KYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTY 160
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 33.1 bits (72), Expect = 0.18
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 598 LPPEADSSISMLQADEKPDVQY 663
LPP+ D S++M+ +EKPDV Y
Sbjct: 146 LPPKIDPSVTMMTVEEKPDVTY 167
>At4g14760.1 68417.m02271 M protein repeat-containing protein
contains Pfam profile: PF02370 M protein repeat
Length = 1676
Score = 32.7 bits (71), Expect = 0.24
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
Frame = +2
Query: 188 KRLELFYPRKMTKSQTQKAWRLRSSIFDELESEDLYTKYK--KLQRMLEFLEVQEEYIKD 361
K LEL + T +++ R+ ++ E+E K + KL + E L V+ + +
Sbjct: 262 KSLELISSLEKTIRDAEESVRVFRDQSEQAETEIKALKQELLKLNEVNEDLNVRYQQCLE 321
Query: 362 EQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGS 487
L++E HAQ+ KR+ S L ++ V++ ++ S
Sbjct: 322 TISKLEREVSHAQDNAKRLSSEVLAGAAKIKTVEEQCALLES 363
>At3g54670.1 68416.m06049 structural maintenance of chromosomes
(SMC) family protein similar to SMC1 protein [Bos
taurus] GI:4235253, 14S cohesin SMC1 subunit (SMC
protein) [Xenopus laevis] GI:3328231; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1257
Score = 31.5 bits (68), Expect = 0.54
Identities = 12/50 (24%), Positives = 32/50 (64%)
Frame = +2
Query: 272 ELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQ 421
+++ ++ K L++ +++ E++++ IKD+ L++E + EE+ RI+
Sbjct: 720 QMKESEISGKISGLEKKIQYAEIEKKSIKDKLPQLEQEERNIIEEIDRIK 769
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 31.5 bits (68), Expect = 0.54
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 598 LPPEADSSISMLQADEKPDVQY 663
LPP+ D S++M+ +EKPD Y
Sbjct: 183 LPPKIDPSVTMMTVEEKPDATY 204
>At1g03080.1 68414.m00282 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 1744
Score = 31.5 bits (68), Expect = 0.54
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = +2
Query: 272 ELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRI 418
E E E L K KL E E+Q + D +LK + HAQEE +R+
Sbjct: 380 EGEVESLKQKVSKLIEENEAYELQYQQCLDTIADLKLKLFHAQEETQRL 428
>At5g65685.1 68418.m08268 soluble glycogen synthase-related contains
weak similarity to Soluble glycogen synthase,
chloroplast precursor (EC 2.4.1.11) (SS III)
(Swiss-Prot:Q43846) [Solanum tuberosum]
Length = 460
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/62 (22%), Positives = 32/62 (51%)
Frame = +2
Query: 254 RSSIFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPL 433
+SSI E + +D++ +++ Q+ + L Q DE LKK+ E + ++++
Sbjct: 55 QSSITKEAKHKDIWNLFREAQKNIMILNKQRLAAVDELEQLKKDKEELLERINQLEAESQ 114
Query: 434 VI 439
++
Sbjct: 115 IV 116
>At3g59820.1 68416.m06675 calcium-binding mitochondrial
protein-related contains weak similarity to
Calcium-binding mitochondrial protein Anon-60Da
(Swiss-Prot:P91927) [Drosophila melanogaster]
Length = 755
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/38 (47%), Positives = 27/38 (71%)
Frame = +2
Query: 314 QRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSV 427
+R LE+LE+QEE IK+E+ +KE +EE+ RI+ V
Sbjct: 516 RRKLEYLEMQEELIKEEE---EKE----EEELTRIKDV 546
>At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical to
XRN2 [Arabidopsis thaliana] GI:11875630; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 1012
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = +2
Query: 209 PRKMTKSQTQKAWRLRSSIFDELESEDLYTKYK-KLQRMLEFLEVQEEYIKDEQR-NL-- 376
P+KM Q QKAW+ + +S+ L + K +M + Q E+ +++++ N+
Sbjct: 906 PKKMNSPQRQKAWKKDETPQSREKSKKLKSSLKVNPLKMKKTKSPQREFTREKKKENITP 965
Query: 377 KKEYLHAQEEVKRIQ 421
+++ AQ +VK I+
Sbjct: 966 QRKLTKAQRQVKHIR 980
>At5g40540.1 68418.m04920 protein kinase, putative similar to
protein kinase ATN1 [Arabidopsis thaliana]
gi|1054633|emb|CAA63387
Length = 353
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +1
Query: 496 LKLLFRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDV 657
+++L R LSTI L P A + N VLPPE+ + S++ +K +
Sbjct: 283 IQMLLRCLSTISSTELVPPAIKRVFSSENT---VLPPESPGTCSLMTVRDKDQI 333
>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
protein similar to SP|P40618 High mobility group protein
HMG2A {Gallus gallus}; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 446
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 215 KMTKSQTQKAWRLRSSIF--DELESEDLYTKYKKLQRMLEF 331
K+ K +T+ + + I E+E E L T+ KKLQ+M EF
Sbjct: 58 KIEKEKTEDLLKEKDEILRKKEVEQEKLKTELKKLQKMKEF 98
>At1g47760.1 68414.m05311 MADS-box protein (AGL102) contains
similarity to MADS-box protein GB:AAC26702 GI:3128222
from [Arabidopsis thaliana]; contains Pfam profile
PF00319: SRF-type transcription factor (DNA-binding and
dimerisation domain)
Length = 184
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +2
Query: 257 SSIFDELESEDLYTKYKKLQRMLEFL-EVQEEYIKDEQRNLKKEYLHAQEEVK 412
+ + + +++ +K + L + LE + E QE+ K +QRNL+K + ++K
Sbjct: 63 NDVVERIQNPSASSKLRSLMKELEQIKEFQEDLRKKQQRNLEKSNMKENVDLK 115
>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 1128
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +2
Query: 215 KMTKSQTQKAWRLRSSIFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLH 394
+MTK + +S + E E+ +L+ +E V EE++ E NLK+E
Sbjct: 494 EMTKKEEMIEEECKSLEIKKEEREEYLRLQSELKSQIEKSRVHEEFLSKEVENLKQEKER 553
Query: 395 AQEE 406
++E
Sbjct: 554 FEKE 557
>At5g58005.1 68418.m07257 expressed protein
Length = 116
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +2
Query: 200 LFYPRKMTKSQTQKAWRLRSSIFDELESEDLYTKYKKLQRMLE 328
L YP++ + S+TQ RSS + E Y + K++QR+L+
Sbjct: 53 LLYPKECSNSRTQFVNNCRSSWVKHFDRE--YCRNKRVQRLLD 93
>At3g44050.1 68416.m04718 kinesin motor protein-related KLP2
protein, Xenopus laevis, PIR:T30335
Length = 1229
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +2
Query: 299 KYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGI 478
K +Q EFL +Q + E +L+K + +E +R+Q + + LE +++G+
Sbjct: 647 KLSSIQDENEFLRMQAIQNRAEMESLQKSLSFSLDEKERLQKLVDNLSNELEGKIRSSGM 706
Query: 479 VG 484
VG
Sbjct: 707 VG 708
>At3g19670.1 68416.m02492 FF domain-containing protein / WW
domain-containing protein weak similarity to
huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
GI:3341980; contains Pfam profiles PF01846: FF domain,
PF00397: WW domain
Length = 960
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/59 (25%), Positives = 36/59 (61%)
Frame = +2
Query: 245 WRLRSSIFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQ 421
WR + D LE ++ ++ +K+ + LE+ +EY++D +R +++ +EE+K+++
Sbjct: 576 WR---KVQDRLEVDERCSRLEKIDQ----LEIFQEYLRDLEREEEEKKKIQKEELKKVE 627
>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
low similarity to nuclear matrix constituent protein 1
(NMCP1) [Daucus carota] GI:2190187
Length = 1042
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Frame = +2
Query: 272 ELESEDLYTKYKKLQRMLEFLEVQEE----YIKDEQRNLKKE 385
E E E + K ++L++ E++ Q E Y+KDE+ N+K+E
Sbjct: 559 EAEWEHIDVKREELRKEAEYITRQREAFSMYLKDERDNIKEE 600
>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
profile: PF00225 Kinesin motor domain; contains
non-consensus splice site (GC) at intron 12
Length = 2722
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/87 (21%), Positives = 47/87 (54%)
Frame = +2
Query: 197 ELFYPRKMTKSQTQKAWRLRSSIFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNL 376
E+ +K+++S + + LR+++ +L +T+ +KL ++ + + ++DE NL
Sbjct: 2159 EMIQTKKVSESMEMELFNLRNAL-GQLNDTVAFTQ-RKLNDAID----ERDNLQDEVLNL 2212
Query: 377 KKEYLHAQEEVKRIQSVPLVIGQFLEA 457
K+E+ + E K +++ + Q E+
Sbjct: 2213 KEEFGKMKSEAKEMEARYIEAQQIAES 2239
>At1g77890.1 68414.m09078 expressed protein
Length = 460
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +2
Query: 224 KSQTQKAWRLRSSIFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEY 388
K+ +Q+ W+ EL++E L +KLQ +E L+ + + RNLK+ Y
Sbjct: 57 KAISQRCWK-------ELQNEKLAKLREKLQLQVEKLQQSKNTFRSLSRNLKERY 104
>At5g55490.1 68418.m06911 expressed protein
Length = 537
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 278 ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVK 412
+SE L LQR+ EF + Q+E + Q L++ + H E K
Sbjct: 292 QSEALQESRNTLQRLKEFSQEQQEDLAKRQEKLQEVHDHLFENSK 336
>At2g41880.1 68415.m05179 guanylate kinase 1 (GK-1) identical to
guanylate kinase (GK-1) [Arabidopsis thaliana]
gi|7861795|gb|AAF70408
Length = 387
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +2
Query: 329 FLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVI 439
FLEV Y++++++ L+KE + + V+ P+VI
Sbjct: 106 FLEVDSPYVREQKKLLRKEVVAWSKGVRGNAEKPIVI 142
>At2g25670.2 68415.m03077 expressed protein
Length = 318
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/70 (21%), Positives = 36/70 (51%)
Frame = +2
Query: 221 TKSQTQKAWRLRSSIFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQ 400
T + Q W +S+ +S+D++ + + + + L+ ++ +++EQ + +H +
Sbjct: 83 TTAPPQSGWS--TSLPSHTDSKDVHVEESESEE--DILDEGDDDVEEEQEQETEVQVHPE 138
Query: 401 EEVKRIQSVP 430
EVK+ VP
Sbjct: 139 PEVKKAPEVP 148
>At2g25670.1 68415.m03076 expressed protein
Length = 318
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/70 (21%), Positives = 36/70 (51%)
Frame = +2
Query: 221 TKSQTQKAWRLRSSIFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQ 400
T + Q W +S+ +S+D++ + + + + L+ ++ +++EQ + +H +
Sbjct: 83 TTAPPQSGWS--TSLPSHTDSKDVHVEESESEE--DILDEGDDDVEEEQEQETEVQVHPE 138
Query: 401 EEVKRIQSVP 430
EVK+ VP
Sbjct: 139 PEVKKAPEVP 148
>At1g29000.1 68414.m03546 heavy-metal-associated domain-containing
protein similar to farnesylated protein ATFP3
[GI:4097547]; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 287
Score = 27.9 bits (59), Expect = 6.7
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = +2
Query: 278 ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLE 454
E ED K ++ ++ E + +EE K E+ N KKE +EEVK ++ I Q +E
Sbjct: 189 EEEDKKKKEEEDKKKKEDEKKKEEEKKKEEENKKKEGEKKKEEVK-VEVTTKTITQVVE 246
>At1g07750.1 68414.m00837 cupin family protein similar to legumin
(11S-globulin) from Ginkgo biloba [GI:949869], 11S
globulin from Avena sativa [GI:472867]
Length = 356
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Frame = +1
Query: 148 SDSTRILLAIETMEEIGIILPEKDDQVT-----DSKGLAFAVL 261
SDS+++ ++ GI+LPEK+++V DS L F V+
Sbjct: 55 SDSSKVAYVLQGSGTAGIVLPEKEEKVIAIKQGDSIALPFGVV 97
>At5g41620.1 68418.m05057 expressed protein weak similarity to
microtubule binding protein D-CLIP-190 (GI:2773363)
[Drosophila melanogaster]; weak similarity to
Synaptonemal complex protein 1 (SCP-1 protein)
(Swiss-Prot:Q15431) [Homo sapiens]; weak similarity to
DNA double-strand break repair rad50 ATPase.
(Swiss-Prot:P58301) [Pyrococcus furiosus]
Length = 543
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Frame = +2
Query: 260 SIFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKK-EYLHAQ--EEVKRIQS 424
S+ +L E L +K K+++RM ++ + ++DE++ K+ E LH + E+ ++S
Sbjct: 170 SVVKQLAEEKLLSKNKEVERMSSAVQSVRKALEDERKLRKRSESLHRKMARELSEVKS 227
>At5g32169.1 68418.m03692 hypothetical protein
Length = 258
Score = 27.5 bits (58), Expect = 8.9
Identities = 8/21 (38%), Positives = 17/21 (80%)
Frame = -3
Query: 400 LCMQIFFLQVSLFILNVLFLY 338
LC ++F +++SL++ ++ FLY
Sbjct: 204 LCSRLFVIRISLYLFSIQFLY 224
>At3g19520.1 68416.m02475 expressed protein contains Pfam profile
PF04776: Protein of unknown function (DUF626)
Length = 312
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 308 KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPL--VIGQFLE 454
KLQ + +E +EE ++ R LK + LH K + P+ IG+ +E
Sbjct: 217 KLQVLKVAIETKEEDVQPPNRRLKSKSLHVYITFKGLAKAPIGDEIGEHVE 267
>At1g58120.1 68414.m06589 expressed protein
Length = 420
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/77 (23%), Positives = 35/77 (45%)
Frame = +2
Query: 254 RSSIFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPL 433
R+ F+ + E + + + E +E +K+E+ + K EE+ R +S+ +
Sbjct: 311 RNQKFEMYKIETVNDEMSLESEKMGMTEWLKENVKEEEYVVMKAEAEMVEEMMRSKSIKM 370
Query: 434 VIGQFLEAVDQNTGIVG 484
V FLE + G+ G
Sbjct: 371 VDELFLECKPKGLGLRG 387
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,465,282
Number of Sequences: 28952
Number of extensions: 260731
Number of successful extensions: 872
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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