Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20270
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    29   0.58 
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   4.1  
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    26   5.4  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    25   9.4  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.4  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    25   9.4  
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po...    25   9.4  

>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 386 PQPERHPEEEDAHLKAELARLATEVATLKNMMHQNKTRAHE 508
           P+ ER P+   A+  ++  ++  E+A LK  +H N  R  E
Sbjct: 167 PKTERRPKLGRANASSQKEKVRREIAILKKCVHPNVVRLRE 207


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +2

Query: 338 SSDERDSGISLGAEYRPQPERHPEEEDAHLKAELARL--ATEVATLKNMMHQNKTRA 502
           S+ ++D+G +   + R + +  P   ++H    LA     TEV  +KN++H+N+  A
Sbjct: 508 STAKKDTGKAGDGQNR-EIQNEPVSLESHFSKSLALQNDPTEVIQVKNVLHRNRRNA 563


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 118 PDLDVPRLLMSYLPYLD 168
           PD D P+LL++Y P++D
Sbjct: 224 PDKDRPQLLLAYAPHVD 240


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 105 VLNLSRSRRAPSPYELSSLSGSGDETAEQYAP 200
           VLN  ++   P PY+L  +  S D+    Y P
Sbjct: 156 VLNQRKNYLKPDPYQLPEMDVSFDKLGSSYDP 187


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 389 QPERHPEEEDAHLKAELARLATEVATLKNMMHQNKTRA 502
           QP    +EE+  L+ + + +  EVAT++++   N T +
Sbjct: 521 QPSGELDEENLKLRLQDSDVDDEVATIRSLKQNNATNS 558


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 410  EEDAHLKAELARLATEVATLKNMMHQNKTRAHETE 514
            +E  HLK+EL  + ++   L+N   QN+++  + E
Sbjct: 1338 QEIGHLKSELETVKSKSEDLENERAQNQSKIEQLE 1372


>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 399

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 410 EEDAHLKAE-LARLATEVATLKNMMHQNKTRAHETERA 520
           E+D  L AE   RLA E   L+NM + N  + +   ++
Sbjct: 230 EDDEALSAEDCNRLAEEYLELRNMQYSNSAKEYRRSKS 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,404,626
Number of Sequences: 5004
Number of extensions: 39068
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)