Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20270
(794 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46725| Best HMM Match : Extensin_2 (HMM E-Value=1.9) 32 0.47
SB_29436| Best HMM Match : PAN (HMM E-Value=0.021) 31 0.81
SB_54930| Best HMM Match : HABP4_PAI-RBP1 (HMM E-Value=0.4) 31 1.1
SB_45323| Best HMM Match : rve (HMM E-Value=5.3e-31) 31 1.1
SB_28178| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_6510| Best HMM Match : Vicilin_N (HMM E-Value=0.44) 30 1.9
SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_31801| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_18736| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_18074| Best HMM Match : Trypan_PARP (HMM E-Value=0.081) 30 2.5
SB_21492| Best HMM Match : Ion_trans (HMM E-Value=1.3e-05) 29 3.3
SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17) 29 4.3
SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31) 29 5.7
SB_15263| Best HMM Match : Jun (HMM E-Value=1.8) 29 5.7
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09) 29 5.7
SB_7532| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_46725| Best HMM Match : Extensin_2 (HMM E-Value=1.9)
Length = 496
Score = 32.3 bits (70), Expect = 0.47
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +2
Query: 290 KQEPGPRSSPSWDGEGSSDERDSGISLGAEYRPQPERHP--EEEDAHLKAELARLATEVA 463
K PG P G+G +R S + + +P P + P ++DA + EL + T +
Sbjct: 318 KPLPGVPGRPGTPGDGRGGQRSSTLGTPGKPKPSPGKPPCRTKKDASIARELRHIKTITS 377
Query: 464 TLKNM 478
+ +N+
Sbjct: 378 SAENL 382
>SB_29436| Best HMM Match : PAN (HMM E-Value=0.021)
Length = 419
Score = 31.5 bits (68), Expect = 0.81
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 5 TSSTTTRPR-AIPRKDSRTRSILPPPCPL 88
T STTT PR + ++ R R +LPPP PL
Sbjct: 264 TQSTTTTPRPSQQQRHPRPRYVLPPPAPL 292
>SB_54930| Best HMM Match : HABP4_PAI-RBP1 (HMM E-Value=0.4)
Length = 365
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +2
Query: 287 IKQEPGPRSSPSWDGEGSSDERDSGISLGAEYRPQPERHPEEE 415
IK+EP P P + E ++E + + AE P+PER PE+E
Sbjct: 89 IKKEPEPEPEP--EPEVKAEEPEPEVE--AEPEPEPEREPEKE 127
>SB_45323| Best HMM Match : rve (HMM E-Value=5.3e-31)
Length = 577
Score = 31.1 bits (67), Expect = 1.1
Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Frame = -3
Query: 318 GDDLGPGS--CFMCWRDSRALATSCRRGE-ICGAVSKEGS----CFLGRTARRSRLRIQI 160
G D G S CF C D LA +CR + ICG SK G CF + +SR QI
Sbjct: 156 GSDTGKKSTLCFRCGSDKH-LADACRHKDTICGYFSKPGHLVRVCFKKKRDEKSRQTHQI 214
>SB_28178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +2
Query: 5 TSSTTTRPRAIPRKDSRTRSILPPPCPLRTSRFSSQLVQI 124
+SS + R R R S +RS+ P P RTS SSQ++Q+
Sbjct: 15 SSSPSERSRRRRRDRSASRSVSRSPSPGRTSMSSSQVLQV 54
>SB_6510| Best HMM Match : Vicilin_N (HMM E-Value=0.44)
Length = 270
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +2
Query: 374 AEYRPQPERHPEEEDAHLKAELARLATEVATLKNMMHQNKTRAHE 508
A R + E+ +EE+ LKAE + A + A LK Q K R HE
Sbjct: 134 ARRRAEREKKKKEEEERLKAE--QEAEQEAELKRRAEQEKRRQHE 176
>SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2557
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +2
Query: 374 AEYRPQPERHPEEEDAHLKAELARLATEVATLKNMMHQNKTRAHE 508
A R + E+ +EE+ LKAE + A + A LK Q K R HE
Sbjct: 2316 ARRRAEREKKKKEEEERLKAE--QEAEQEAELKRRAEQEKRRQHE 2358
>SB_31801| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1018
Score = 29.9 bits (64), Expect = 2.5
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Frame = -3
Query: 318 GDDLGPGS--CFMCWRDSRALATSCRRGE-ICGAVSKEGS----CFLGRTARRSRLRIQI 160
G D G S CF C D LA +C+ + ICG SK G CF + +SR QI
Sbjct: 207 GSDTGKKSTLCFGCGSDKH-LADACKHKDTICGYCSKPGHLVRVCFKKKRDEKSRQTHQI 265
Query: 159 RKIAH 145
H
Sbjct: 266 TTEEH 270
>SB_18736| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1452
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 275 SLQHIKQEPGPRSSPSWDGEGSSDERDSGISLGAEYRPQPER 400
S + +++E P PS DGEG+ + + S+ AE++ + R
Sbjct: 786 SRKPLQEEADPDYIPSEDGEGAQQQENETASIAAEFKSEMMR 827
>SB_18074| Best HMM Match : Trypan_PARP (HMM E-Value=0.081)
Length = 524
Score = 29.9 bits (64), Expect = 2.5
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Frame = +2
Query: 203 KQLPSFET--APQISPRRQDVASALLSLQHIKQEPGPRSSPSWDGEGSSD-ERDSGISLG 373
+Q PSF+ AP P+ + A L + EP P P + E + E +
Sbjct: 220 EQKPSFQEQKAPPPVPQTKRKPPAKLPPRQPVAEPEPERQPEPEPEPEQEPEPEPEPEPE 279
Query: 374 AEYRPQPERHPEEEDAHL 427
E P+PE PE E H+
Sbjct: 280 PEPEPEPEPEPEPEPVHV 297
>SB_21492| Best HMM Match : Ion_trans (HMM E-Value=1.3e-05)
Length = 1130
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = -3
Query: 105 LNREVRSGQGGGSMLRVRESFLGMALGRVVVELV 4
LN+ +R+G G G +LR R S M GRVV +L+
Sbjct: 947 LNQGLRNGGGIGDVLRRRSSKEKMFAGRVVYDLM 980
>SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1318
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Frame = +2
Query: 230 PQISPRRQDVASALLSLQHI--KQEPGPRS-----SPSWDGEGSSDERDSGISLGAEYRP 388
P SP + +S + QH+ +Q RS +PSWD + RDS + + R
Sbjct: 781 PPSSPESRSSSSGTRASQHVGERQVSPVRSYVMDTAPSWDSQVDGAPRDSRTRVTSPSR- 839
Query: 389 QPERHPEEEDAHL 427
+PE P AH+
Sbjct: 840 KPEMEPVRVTAHI 852
>SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)
Length = 1249
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 377 EYRPQPERHPEEEDAHLKAELARLATEVATLKNMMHQNKTRAHETER 517
E R Q E+ EE+A KAE + A E A ++ + + K + E +R
Sbjct: 246 ERRRQEEKRRAEEEAKRKAEEEKAAREKAEMEEKLRRLKLQEKEEKR 292
>SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31)
Length = 367
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +2
Query: 377 EYRPQPERH---PEEEDAHLKAELARLATEVATLKNMMHQNKTRAHETE 514
+YRP+ ERH EE+D+H+K + ++ + + H E
Sbjct: 75 QYRPRLERHRYEDEEDDSHVKRPMNSFMIWAKVMRRKFAEENPKLHNAE 123
>SB_15263| Best HMM Match : Jun (HMM E-Value=1.8)
Length = 315
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 118 PDLDVPRLLMSYLPYLDP-ETRPPSSTPQKTT 210
P +D PR +P +DP T+PP PQ TT
Sbjct: 198 PPIDPPRTQPPPIPPIDPPRTQPPPIFPQPTT 229
>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
Length = 2059
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/64 (23%), Positives = 29/64 (45%)
Frame = +2
Query: 332 EGSSDERDSGISLGAEYRPQPERHPEEEDAHLKAELARLATEVATLKNMMHQNKTRAHET 511
E + ER+S + L E+R + EE ++ + R E+ + + + K R +
Sbjct: 1663 ESFAKERESLMILEEEHRKREREREEERRKDVRERMKRRVEEIRAQRQHVAEQKGRDQQI 1722
Query: 512 ERAG 523
E+ G
Sbjct: 1723 EKEG 1726
>SB_7532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 416
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/65 (26%), Positives = 27/65 (41%)
Frame = +2
Query: 215 SFETAPQISPRRQDVASALLSLQHIKQEPGPRSSPSWDGEGSSDERDSGISLGAEYRPQP 394
S+ APQI P+ Q +QEP P + W + + R L ++R +
Sbjct: 73 SWSAAPQIGPQSSFYTRFAFGPQDARQEPAPSNYQPWIPQETQRVRQDRWDLPRQHRVE- 131
Query: 395 ERHPE 409
+PE
Sbjct: 132 SLYPE 136
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,029,559
Number of Sequences: 59808
Number of extensions: 322185
Number of successful extensions: 1133
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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