Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20270
         (794 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical...    34   0.10 
Z48006-1|CAA88047.1|  642|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z82076-6|CAH10809.1|  450|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U40427-1|AAA81467.2|  798|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical
           protein Y116A8C.36 protein.
          Length = 1097

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
 Frame = +2

Query: 296 EPG---PRSSPSWDGEGSSDERDSGISLGAEYRPQPERHPEEEDAHLKAELARLATEVAT 466
           EPG   P+ SP+   +   D+R   +S G     +  R  EEE+   +AE+ +   E   
Sbjct: 276 EPGAEPPQKSPA--PKTFEDKRQDNLSKGQAELERRRRVLEEEEQRRRAEVEKKEREEEA 333

Query: 467 LKNMMHQNKTRAHETER 517
            KN   Q K R  E ER
Sbjct: 334 KKNRERQEKERQAEVER 350


>Z48006-1|CAA88047.1|  642|Caenorhabditis elegans Hypothetical
           protein F19C6.1 protein.
          Length = 642

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 206 QLPSFETAPQISPRRQDVASALLSLQHIKQEPGPRSS 316
           ++  +ET+      R+D+AS+++SL H K E  P  S
Sbjct: 86  KVEEYETSDDDGQSRRDLASSIVSLLHSKPEDNPSGS 122


>Z82076-6|CAH10809.1|  450|Caenorhabditis elegans Hypothetical
           protein W07G1.5b protein.
          Length = 450

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
 Frame = +2

Query: 212 PSFETAPQISPRRQDVASALLSLQHIKQEPGPRSSPSWDGEGSSDE------RDSGISLG 373
           P+   AP     R   A   L  + + Q+P P SS   + EG+ DE       D     G
Sbjct: 327 PATAKAPGTPANRSATA---LEAKSVSQQPTPESSEEEEDEGNGDEDDDEEVEDDEEDAG 383

Query: 374 AEYRPQPERHPEEEDAHLKAE 436
           ++   +     EEED   + E
Sbjct: 384 SDEAEEEPSDEEEEDEETEEE 404


>U40427-1|AAA81467.2|  798|Caenorhabditis elegans Hypothetical
           protein F43C9.3 protein.
          Length = 798

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 249 RRGEICGAVSKEGSCFLGRTARRSRLRIQI 160
           R GEI  A+   G C+L    RR+R  I I
Sbjct: 754 RAGEIVKAIGFSGECYLVENGRRARAAIPI 783


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,727,045
Number of Sequences: 27780
Number of extensions: 236698
Number of successful extensions: 894
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)