Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20270
         (794 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   7.5  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   7.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   10.0 

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +2

Query: 311 SSPSWDGEGSSDERDSGISLGAEYRPQ 391
           S+PS    G S  RDS I  G   R Q
Sbjct: 336 SNPSITRTGLSSVRDSSIICGGNKRSQ 362


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 585 KEMLYCMISCSCN 623
           KEM Y +I CS N
Sbjct: 145 KEMFYLIIECSLN 157


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 44  FLVWLWGALWWS 9
           F VW++G LW S
Sbjct: 128 FKVWIFGDLWCS 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,128
Number of Sequences: 438
Number of extensions: 3187
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)