Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20270
(794 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g15200.1 68417.m02329 formin homology 2 domain-containing pro... 30 1.5
At3g52850.1 68416.m05824 vacuolar sorting receptor, putative nea... 30 2.0
At1g28330.3 68414.m03480 dormancy-associated protein, putative (... 29 3.6
At1g28330.2 68414.m03479 dormancy-associated protein, putative (... 29 3.6
At1g28330.1 68414.m03478 dormancy-associated protein, putative (... 29 3.6
At5g50700.1 68418.m06282 short-chain dehydrogenase/reductase (SD... 28 6.2
At5g50600.1 68418.m06268 short-chain dehydrogenase/reductase (SD... 28 6.2
At2g30290.1 68415.m03687 vacuolar sorting receptor, putative sim... 28 6.2
At4g14250.1 68417.m02198 UBX domain-containing protein low simil... 28 8.2
At2g27650.1 68415.m03351 ubiquitin carboxyl-terminal hydrolase-r... 28 8.2
At2g14740.2 68415.m01663 vacuolar sorting receptor, putative nea... 28 8.2
At2g14740.1 68415.m01662 vacuolar sorting receptor, putative nea... 28 8.2
>At4g15200.1 68417.m02329 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 600
Score = 30.3 bits (65), Expect = 1.5
Identities = 27/85 (31%), Positives = 37/85 (43%)
Frame = +2
Query: 212 PSFETAPQISPRRQDVASALLSLQHIKQEPGPRSSPSWDGEGSSDERDSGISLGAEYRPQ 391
PSF P +PR D + S E SSPS E S S S+ RP
Sbjct: 83 PSFAPGPAPNPRSYDWLAPASSPNEPPAETPDESSPSPSEETPSVVAPSQ-SVPGPPRPP 141
Query: 392 PERHPEEEDAHLKAELARLATEVAT 466
P+R +++D +K +A +T V T
Sbjct: 142 PQRE-KKDDILMKLIIAVASTAVLT 165
>At3g52850.1 68416.m05824 vacuolar sorting receptor, putative nearly
identical to vacuolar sorting receptor homolog
(GP:1737218) [Arabidopsis thaliana]
Length = 623
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = -3
Query: 285 CWRDSRALATSCR---RGEICGAVSKEGSCFLG 196
CW+D A T+CR RG +C + +G F+G
Sbjct: 422 CWQDKAANITACRDTFRGRLCECPTVQGVKFVG 454
>At1g28330.3 68414.m03480 dormancy-associated protein, putative
(DRM1) identical to dormancy-associated protein
[Arabidopsis thaliana] GI:2995990; similar to
dormancy-associated protein GI:2605887 from [Pisum
sativum]; contains Pfam profile PF05564: Dormancy/auxin
associated protein
Length = 132
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +2
Query: 2 GTSSTTTRPRAIPRKDSRTRSILPPPCPLRTSRFSSQLVQISTCPVS 142
GT +T T P PRKD+ RS+ P L T S + T P S
Sbjct: 60 GTPTTPTTPTT-PRKDNVWRSVFNPGSNLATRAIGSNIFDKPTHPNS 105
>At1g28330.2 68414.m03479 dormancy-associated protein, putative
(DRM1) identical to dormancy-associated protein
[Arabidopsis thaliana] GI:2995990; similar to
dormancy-associated protein GI:2605887 from [Pisum
sativum]; contains Pfam profile PF05564: Dormancy/auxin
associated protein
Length = 132
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +2
Query: 2 GTSSTTTRPRAIPRKDSRTRSILPPPCPLRTSRFSSQLVQISTCPVS 142
GT +T T P PRKD+ RS+ P L T S + T P S
Sbjct: 60 GTPTTPTTPTT-PRKDNVWRSVFNPGSNLATRAIGSNIFDKPTHPNS 105
>At1g28330.1 68414.m03478 dormancy-associated protein, putative
(DRM1) identical to dormancy-associated protein
[Arabidopsis thaliana] GI:2995990; similar to
dormancy-associated protein GI:2605887 from [Pisum
sativum]; contains Pfam profile PF05564: Dormancy/auxin
associated protein
Length = 122
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +2
Query: 2 GTSSTTTRPRAIPRKDSRTRSILPPPCPLRTSRFSSQLVQISTCPVS 142
GT +T T P PRKD+ RS+ P L T S + T P S
Sbjct: 60 GTPTTPTTPTT-PRKDNVWRSVFNPGSNLATRAIGSNIFDKPTHPNS 105
>At5g50700.1 68418.m06282 short-chain dehydrogenase/reductase (SDR)
family protein contains oxidoreductase, short chain
dehydrogenase/reductase family domain, Pfam:PF00106
Length = 349
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 162 SGSGDETAEQYAPENNCLPLKLRHKSHLGDKTSLA 266
SG G++ A +YA CL L R K+ L + +A
Sbjct: 57 SGIGEQLAYEYACRGACLALTARRKNRLEEVAEIA 91
>At5g50600.1 68418.m06268 short-chain dehydrogenase/reductase (SDR)
family protein similar to sterol-binding dehydrogenase
steroleosin GI:15824408 from [Sesamum indicum]
Length = 349
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 162 SGSGDETAEQYAPENNCLPLKLRHKSHLGDKTSLA 266
SG G++ A +YA CL L R K+ L + +A
Sbjct: 57 SGIGEQLAYEYACRGACLALTARRKNRLEEVAEIA 91
>At2g30290.1 68415.m03687 vacuolar sorting receptor, putative
similar to vacuolar sorting receptor homolog
[Arabidopsis thaliana] GI:1737218
Length = 625
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Frame = -3
Query: 285 CWRDSRALATSCR---RGEICGAVSKEGSCFLG 196
CW D T+CR RG +C +G FLG
Sbjct: 426 CWEDKTTNITACRDTFRGRVCQCPIVQGVKFLG 458
>At4g14250.1 68417.m02198 UBX domain-containing protein low
similarity to 60S ribosomal protein L2 [Nicotiana
tabacum] GI:9230281; contains Pfam profile PF00789: UBX
domain
Length = 724
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +2
Query: 323 WDGEGSSDERDSGISLGAEYRPQPER--HPEEEDA 421
WD E +S+E DS +S + YRP P H EDA
Sbjct: 95 WDDESTSEESDSRLS--SLYRPPPSLFFHGSFEDA 127
>At2g27650.1 68415.m03351 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF04780:
Protein of unknown function (DUF629), PF04781: Protein
of unknown function (DUF627)
Length = 1106
Score = 27.9 bits (59), Expect = 8.2
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Frame = +2
Query: 239 SPRRQDVASALLSLQHIKQEPGPRSSPSWDGEGSSDERDSGISLGAEYRPQPERHPEEED 418
S + D A A L L+ K+ P P S + +S +R+S +P PE
Sbjct: 705 SKAKSDAAVADLLLEEEKKNPKPSPIQSKKKKNTSKKRNSTSMSSPLSKPGEHLEPETTS 764
Query: 419 AHLK---AELARLATEVATLKNMMHQNKTRAH 505
++ EL + +KNM+ ++ H
Sbjct: 765 PTVEEDSMELGDTVNQEEVMKNMLGEDSQSEH 796
>At2g14740.2 68415.m01663 vacuolar sorting receptor, putative nearly
identical to vacuolar sorting receptor homolog
[Arabidopsis thaliana] GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -3
Query: 285 CWRDSRALATSCR---RGEICGAVSKEGSCFLG 196
CW+D A T+C+ RG +C + +G F G
Sbjct: 427 CWQDKSANITACKDTFRGRVCECPTVDGVQFKG 459
>At2g14740.1 68415.m01662 vacuolar sorting receptor, putative nearly
identical to vacuolar sorting receptor homolog
[Arabidopsis thaliana] GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -3
Query: 285 CWRDSRALATSCR---RGEICGAVSKEGSCFLG 196
CW+D A T+C+ RG +C + +G F G
Sbjct: 427 CWQDKSANITACKDTFRGRVCECPTVDGVQFKG 459
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,053,547
Number of Sequences: 28952
Number of extensions: 224504
Number of successful extensions: 793
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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