Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20268
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    27   2.2  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    26   3.9  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    25   5.1  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   5.1  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    25   5.1  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    25   5.1  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    25   5.1  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    25   5.1  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    25   5.1  
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce...    25   5.1  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   6.8  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   6.8  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    25   9.0  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    25   9.0  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    25   9.0  

>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -3

Query: 234 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 103
           SV   + DG  +  +  +++RQ V+ P +  F +   +GR F+E
Sbjct: 86  SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 19/69 (27%), Positives = 34/69 (49%)
 Frame = +2

Query: 50  SSSKIY*FRMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA 229
           S SK+    +A S  +  ++ D P+ +T   S L+ F+T  +    +  + VLPS  D  
Sbjct: 26  SPSKVCRDNIALSEHNVITVLDTPQRSTQCDSLLKSFSTPLV----SGSEDVLPSPRDAL 81

Query: 230 TEKTQKSLS 256
               +KS++
Sbjct: 82  NITNKKSVT 90


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 441 DRSYRSGEGKEQIPERHRELRSHK 512
           D S R   G  +IP+RHR+ R  +
Sbjct: 2   DLSSRLSSGSSRIPKRHRDYRDEE 25


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 402 EAHDDGRKESTAPDRSYRSGEGKEQIPERHRE 497
           ++HD G   S + DR     + K++   +HRE
Sbjct: 720 QSHDHGHSHSKSHDREKEKEKKKDREHRKHRE 751


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 429 ILFFRRRVLHLSLVEVFNSVQEVL 358
           I++ + + LHL LV +FN   E++
Sbjct: 195 IIYLKAKELHLPLVHIFNVENEIV 218


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 243 WVFSVATSSADGSTIFSLVSTSRRQL 166
           W+FSVA S      IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 243 WVFSVATSSADGSTIFSLVSTSRRQL 166
           W+FSVA S      IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 243 WVFSVATSSADGSTIFSLVSTSRRQL 166
           W+FSVA S      IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 243 WVFSVATSSADGSTIFSLVSTSRRQL 166
           W+FSVA S      IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147


>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 246 FWVFSVATSSADGSTIFSLVSTSRRQLVLKPSS 148
           FW +S+  S   G  I SL +   RQ + +PSS
Sbjct: 83  FWGYSLTFSHEGGPYIGSLANFGLRQTLGRPSS 115


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
 Frame = +2

Query: 80  ACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAED-VATEKTQKSLS 256
           A S S TP        +T + S    +NTS +    +     L SA    AT  +   LS
Sbjct: 383 ATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASSTPLS 442

Query: 257 TVS 265
           +V+
Sbjct: 443 SVN 445


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +1

Query: 235 EDPEVFIDGIEKFDSSQLK---HTETQEKNPLPDKDVVAAEKAHQN-LLDGVEHFDKTQM 402
           ED E  + G E + SSQ +   + ET  K P P+ + +    + +N  +   ++ D   M
Sbjct: 159 EDLETTLKGDENYSSSQKEIYDNDETIPKPPSPEVEKIETSTSVENAYITNSQYNDTLDM 218

Query: 403 KHTTTE 420
           +  T++
Sbjct: 219 EDQTSD 224


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 12  PTESLSARIFYPLPHQKYIDSEWPAP*VTLP 104
           P   +SA  F P+P+  Y D+ + A  V  P
Sbjct: 144 PNMYVSANTFIPMPYAHYTDNMYHAKPVNRP 174


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 253 IDGIEKFDSSQLKHTETQEKNPLPD 327
           + G +  DSS +K T  +E  PLP+
Sbjct: 7   LHGPKPMDSSHIKVTNVKELKPLPE 31


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +2

Query: 107 LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLSTVSRSLI 277
           L  LPK  T+    LE   T+   D+D      L   ++   E T +  S+V  + +
Sbjct: 248 LPSLPKDTTEDNPALERVETTASLDMDYKPLEPLAPIQEAPVEDTSEPFSSVPEATL 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,003,197
Number of Sequences: 5004
Number of extensions: 38342
Number of successful extensions: 163
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)