Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20268
(518 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46525| Best HMM Match : Thymosin (HMM E-Value=0) 65 3e-11
SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9) 33 0.11
SB_15701| Best HMM Match : MT-A70 (HMM E-Value=1.6e-17) 31 0.43
SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26) 31 0.43
SB_46753| Best HMM Match : Fimbrial_CS1 (HMM E-Value=1.1) 31 0.57
SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01) 25 0.98
SB_16625| Best HMM Match : Death (HMM E-Value=1.5) 30 1.00
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91) 30 1.3
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_13912| Best HMM Match : rRNA_methylase (HMM E-Value=2.6) 29 1.7
SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_35592| Best HMM Match : zf-CCHC (HMM E-Value=0.0087) 29 1.7
SB_52732| Best HMM Match : M (HMM E-Value=0.019) 29 2.3
SB_36280| Best HMM Match : Dehydrin (HMM E-Value=4.4) 29 3.0
SB_16870| Best HMM Match : Methyltransf_3 (HMM E-Value=1) 29 3.0
SB_7539| Best HMM Match : Sulfatase (HMM E-Value=3.5e-05) 29 3.0
SB_20040| Best HMM Match : DUF293 (HMM E-Value=2.9) 29 3.0
SB_34166| Best HMM Match : RVT_1 (HMM E-Value=1e-23) 28 4.0
SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21) 28 4.0
SB_52306| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_53576| Best HMM Match : SCAN (HMM E-Value=2.3) 28 5.3
SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_54391| Best HMM Match : MarR (HMM E-Value=0.95) 27 7.0
SB_49258| Best HMM Match : Herpes_UL6 (HMM E-Value=0.18) 27 7.0
SB_31755| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_17850| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28) 27 9.3
>SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)
Length = 750
Score = 65.3 bits (152), Expect = 3e-11
Identities = 33/67 (49%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Frame = +1
Query: 241 PEVFID--GIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTT 414
PEV D + FD+S+LKH E QEKNPLP KD + E V+ FD +++KH
Sbjct: 674 PEVLPDVSAVASFDASKLKHVEVQEKNPLPTKDDITTESTETRA--EVKTFDHSKLKHVQ 731
Query: 415 TEEKNPL 435
TEEKNPL
Sbjct: 732 TEEKNPL 738
Score = 62.1 bits (144), Expect = 3e-10
Identities = 33/67 (49%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Frame = +1
Query: 241 PEVFIDGIE--KFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTT 414
PEV D E KFD+S+LKH ET+EK +P KDV+ AE V+ FD +++KH
Sbjct: 522 PEVLPDRSEVAKFDTSKLKHVETKEKVVMPTKDVIEAEAIDSRA--EVKSFDHSKLKHVV 579
Query: 415 TEEKNPL 435
T+EKNPL
Sbjct: 580 TQEKNPL 586
Score = 61.7 bits (143), Expect = 4e-10
Identities = 33/67 (49%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Frame = +1
Query: 241 PEVFIDGIE--KFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTT 414
P+ F D E F+ S+L+H ET+EKN LP KD +A EK GVE F K ++KH
Sbjct: 445 PDEFPDRAEVKSFEKSKLQHVETKEKNTLPTKDTIADEK-RTAPFSGVEVFQKNKLKHVE 503
Query: 415 TEEKNPL 435
T EKNPL
Sbjct: 504 TLEKNPL 510
Score = 56.8 bits (131), Expect = 1e-08
Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Frame = +1
Query: 262 IEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLD--GVEHFDKTQMKHTTTEEKNPL 435
++ FD S+LKH ET EKNPLP V+ E + L D V FD +++KH +EKNPL
Sbjct: 643 VKSFDHSKLKHVETVEKNPLPSAAVLKEEMRPEVLPDVSAVASFDASKLKHVEVQEKNPL 702
Score = 54.4 bits (125), Expect = 5e-08
Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Frame = +1
Query: 262 IEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLD--GVEHFDKTQMKHTTTEEKN 429
++ FD S+LKH TQEKNPLP + E +N D V FD T++KH TT+EK+
Sbjct: 567 VKSFDHSKLKHVVTQEKNPLPTPQTLHEELIPKNKPDRSEVASFDHTKLKHVTTQEKS 624
Score = 54.0 bits (124), Expect = 7e-08
Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Frame = +1
Query: 259 GIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLD--GVEHFDKTQMKHTTTEEK 426
G+E F ++LKH ET EKNPLPD + AE + L D V FD +++KH T+EK
Sbjct: 490 GVEVFQKNKLKHVETLEKNPLPDAQNIRAEMMPEVLPDRSEVAKFDTSKLKHVETKEK 547
Score = 51.2 bits (117), Expect = 5e-07
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Frame = +1
Query: 253 IDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLD--GVEHFDKTQMKHTTTEEK 426
+ + KFD++ LKH +T+EKN LP + + E D V+ F+K++++H T+EK
Sbjct: 411 VSEVAKFDAANLKHVQTKEKNTLPSDETIKQELQPDEFPDRAEVKSFEKSKLQHVETKEK 470
Query: 427 NPL 435
N L
Sbjct: 471 NTL 473
Score = 47.2 bits (107), Expect = 8e-06
Identities = 22/58 (37%), Positives = 34/58 (58%)
Frame = +1
Query: 262 IEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPL 435
+ FD ++LKH TQEK+ +P ++ + E V+ FD +++KH T EKNPL
Sbjct: 607 VASFDHTKLKHVTTQEKSIMPSQEDIKEEAVDSRA--EVKSFDHSKLKHVETVEKNPL 662
Score = 45.6 bits (103), Expect = 2e-05
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = +1
Query: 262 IEKFDSSQLKHTETQEKNPLPDKDVVAAEKA 354
++ FD S+LKH +T+EKNPLPD +A EKA
Sbjct: 719 VKTFDHSKLKHVQTEEKNPLPDAKTIAQEKA 749
Score = 33.9 bits (74), Expect = 0.081
Identities = 15/40 (37%), Positives = 28/40 (70%)
Frame = +2
Query: 116 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 235
+P+V D +S++ F+TS L+ V+T EK+V+P+ + + E
Sbjct: 521 MPEVLPD-RSEVAKFDTSKLKHVETKEKVVMPTKDVIEAE 559
Score = 31.5 bits (68), Expect = 0.43
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +2
Query: 116 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 235
+PK D +S++ F+ + L+ V T EK ++PS ED+ E
Sbjct: 597 IPKNKPD-RSEVASFDHTKLKHVTTQEKSIMPSQEDIKEE 635
>SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)
Length = 413
Score = 33.5 bits (73), Expect = 0.11
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +2
Query: 104 SLKDLPKVATDLKSQLEGFNTSCL-RDVDTNEKIVLPSAEDVATEKTQKS 250
SLK L K+ TDL+S ++G ++ L ++V+ K+V + +T K + S
Sbjct: 333 SLKALAKICTDLESNIQGIKSNPLAKEVERTNKLVYEIFKKFSTSKVEAS 382
>SB_15701| Best HMM Match : MT-A70 (HMM E-Value=1.6e-17)
Length = 1178
Score = 31.5 bits (68), Expect = 0.43
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +2
Query: 86 SVSDTPSLKDLPKVAT--DLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLST 259
S+ ++P+ DLP++A+ +++S + G + T P ATE T + +T
Sbjct: 864 SIVNSPNTNDLPQLASSGNIESPINGNQQQIVDSSRTTRGETEPRPAQTATENTTRGNAT 923
Query: 260 VSRSLI 277
RSLI
Sbjct: 924 RGRSLI 929
>SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)
Length = 1064
Score = 31.5 bits (68), Expect = 0.43
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 34 ESSIPFLIKNILIQNGLLRE*HSLPERPPQGRHRPEESARRLQHQ 168
E S+PF N QN ++ +P R PQG H + A+ +QH+
Sbjct: 224 EMSLPFKKHNTFRQNVDIK---GIPSRLPQGEHSDRKKAQEVQHK 265
>SB_46753| Best HMM Match : Fimbrial_CS1 (HMM E-Value=1.1)
Length = 982
Score = 31.1 bits (67), Expect = 0.57
Identities = 12/72 (16%), Positives = 36/72 (50%)
Frame = +3
Query: 297 RDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQ 476
++ G+ + +++ R E P + L + ++ D+ + +E PD+ + +++
Sbjct: 829 QEQGKPDKNKEKQDREQEKPDKDLEKQYQKQEKPDKGQEKQDREQEKPDKDQEKQDREQE 888
Query: 477 IPERHRELRSHK 512
P++ +E + H+
Sbjct: 889 KPDKDQEKQDHE 900
>SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01)
Length = 590
Score = 24.6 bits (51), Expect(2) = 0.98
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 393 DSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHREL 500
DSD+ +DD +STA R R + + P R L
Sbjct: 281 DSDDDYDDREGDSTAKIRKGRRSDTDDLSPNPRRLL 316
Score = 24.2 bits (50), Expect(2) = 0.98
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 276 FEPAEAHRDSGEE 314
FEP E H DSG+E
Sbjct: 266 FEPMEIHDDSGDE 278
>SB_16625| Best HMM Match : Death (HMM E-Value=1.5)
Length = 528
Score = 30.3 bits (65), Expect = 1.00
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 298 ETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 408
+T E++P DK A +LLDG+ FD+ + +H
Sbjct: 261 KTIEQDPTSDKSYKALRDTTHDLLDGLRDFDQAKEEH 297
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 298 ETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 408
+T E++P +K A +LLDG++HF + + +H
Sbjct: 163 KTIEQDPSSEKSYQALRDTTHDLLDGLQHFGQAKEEH 199
>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
Length = 1249
Score = 29.9 bits (64), Expect = 1.3
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 86 SVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDV-DTNEKIVLPSAEDVAT 232
S SD P+ D A+D+KS + T DV T++ V PSA DV T
Sbjct: 617 SASDVPTTSDDQPSASDVKSTSDDQVTPPSSDVPTTSDDQVTPSASDVPT 666
>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1929
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 426 ESTAPDRSYRSGEGKEQIPERHR 494
+STA D SY SG G E P HR
Sbjct: 483 DSTASDSSYDSGSGPELSPNEHR 505
>SB_13912| Best HMM Match : rRNA_methylase (HMM E-Value=2.6)
Length = 692
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 298 ETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 408
+T E++P +K A +LLDG+ +FD+ + +H
Sbjct: 537 KTIEQDPSSEKSYQALRDTTHDLLDGLRYFDQAKEEH 573
>SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 298 ETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 408
+T E++P +K A +LLDG+ +FD+ +H
Sbjct: 567 KTIEQDPSSEKSYQALRDTTHDLLDGLRYFDQASKEH 603
>SB_35592| Best HMM Match : zf-CCHC (HMM E-Value=0.0087)
Length = 556
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 298 ETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 408
+T E++P +K A +LLDG+ +FD+ +H
Sbjct: 492 KTIEQDPSSEKSYQALRDTTHDLLDGLRYFDQASKEH 528
>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
Length = 1366
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 107 LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE-KTQKSLSTVS 265
L DL +V +LKS+ EG CL D++ + DV E + KS ++S
Sbjct: 1125 LMDLSRVGEELKSENEGLQQKCL-DLEKQRDTIKQDLADVQKEHENLKSAVSIS 1177
>SB_36280| Best HMM Match : Dehydrin (HMM E-Value=4.4)
Length = 426
Score = 28.7 bits (61), Expect = 3.0
Identities = 20/72 (27%), Positives = 27/72 (37%)
Frame = +3
Query: 282 PAEAHRDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSG 461
P+ RDS E S + + SPP S S + DD R R R
Sbjct: 51 PSSLGRDSSERRPSARVSSDNSRSPPHRRDSSRRSHSPSRRSSDD-RSTDARDRRDRRRS 109
Query: 462 EGKEQIPERHRE 497
+E+ P R R+
Sbjct: 110 SSRERRPPRDRD 121
>SB_16870| Best HMM Match : Methyltransf_3 (HMM E-Value=1)
Length = 766
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 11/63 (17%)
Frame = +1
Query: 253 IDGIEKFDSSQLKHTE-----------TQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQ 399
+DG+ FD ++ +H + E++P +K A +LLDG+ +FD+ +
Sbjct: 193 LDGLRYFDQAKEEHAKLIPKYHEIMIKNIEQDPKSEKSYQALRDTTHDLLDGLRYFDQAK 252
Query: 400 MKH 408
+H
Sbjct: 253 EEH 255
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 307 EKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 408
E++P +K A +LLDG+ +FD+ + +H
Sbjct: 75 EQDPKSEKSYQALRDTTHDLLDGLRYFDQAKEEH 108
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 307 EKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 408
E++P +K A +LLDG+ +FD+ + +H
Sbjct: 173 EQDPKSEKSYQALRDTTHDLLDGLRYFDQAKEEH 206
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 307 EKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 408
E++P +K A +LLDG+ +FD+ + +H
Sbjct: 320 EQDPKSEKSYQALRDTTHDLLDGLRYFDQAKEEH 353
>SB_7539| Best HMM Match : Sulfatase (HMM E-Value=3.5e-05)
Length = 492
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 236 SQWRRLQQTEAQSFHWCRRHGDSWC*SLRADSSGLWRPW 120
S WRRLQ+ A S + + D +L A+ G W PW
Sbjct: 419 SLWRRLQELNATSLEYRLQPEDPRSIAL-AERLGRWEPW 456
>SB_20040| Best HMM Match : DUF293 (HMM E-Value=2.9)
Length = 646
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = -3
Query: 480 EFVLFLLRFDSFDRGQWILFFRRRVLHLSLVEVFNSVQEVL 358
+FVL++LRF +D I ++ + HL+LVE + +Q+ L
Sbjct: 295 DFVLYMLRFSDYD----IYTGKKSIAHLTLVEFESWLQDEL 331
>SB_34166| Best HMM Match : RVT_1 (HMM E-Value=1e-23)
Length = 385
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 256 DGIEKFDSSQLKHTETQEKNPLP 324
D +E+F S +H T +KNPLP
Sbjct: 206 DRLEQFSSQTGRHINTTKKNPLP 228
>SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)
Length = 781
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 51 PHQKYIDSEWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTP 191
P + + E P P + L P T+ P+ V +ASTP S +P
Sbjct: 517 PRNSFAEYEKPLPTLPLSPTNTTTGRPRLSTVPPEASTPTDSFPKSP 563
>SB_52306| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 294
Score = 27.9 bits (59), Expect = 5.3
Identities = 18/71 (25%), Positives = 28/71 (39%)
Frame = +3
Query: 282 PAEAHRDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSG 461
P + HR S + +G+R G+ PE R ++ + E + T G
Sbjct: 75 PEKQHRGSVHKRGNGER----GQGSPEKQQRGSVHKRGNGEGKSSPENQHTGSIYKRGKG 130
Query: 462 EGKEQIPERHR 494
EGK +HR
Sbjct: 131 EGKSSPENQHR 141
>SB_53576| Best HMM Match : SCAN (HMM E-Value=2.3)
Length = 334
Score = 27.9 bits (59), Expect = 5.3
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Frame = +3
Query: 306 GEEPASGQRR----CRSGESPPEPLGRS*T-LRQDSDEAHDDGRK---ESTAPDRSYRSG 461
GEEP+S S + P P+ + + +D D+ +G + ES A DRS+ SG
Sbjct: 181 GEEPSSRTETPDLYILSNDIPTSPVDEAPLPVDEDDDDEQVNGLRMLPESVALDRSHESG 240
Query: 462 EGKEQIP 482
G +P
Sbjct: 241 RGTPHLP 247
>SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1884
Score = 27.9 bits (59), Expect = 5.3
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = -3
Query: 195 SLVSTSRRQLVLKPSS*LFRSVATLGRSFREGVSLTEQAILNQYIFDEEGDRRFVHSATL 16
SLV TS KP L+ VA +GR F V+ T+ + + EEG + H L
Sbjct: 12 SLVGTSCSNSQEKPIQRLYNVVAVVGRHFTYRVTPTDGS--KNFKITEEGKKTLPHWLAL 69
Query: 15 SD 10
+
Sbjct: 70 DE 71
>SB_54391| Best HMM Match : MarR (HMM E-Value=0.95)
Length = 837
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 307 EKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 408
E++P +K A +LLDG+ +FD+ +H
Sbjct: 308 EQDPSSEKSYQALRDTTHDLLDGLRYFDQAWKEH 341
>SB_49258| Best HMM Match : Herpes_UL6 (HMM E-Value=0.18)
Length = 899
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 307 EKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 408
E++P +K A +LLDG+ +FD+ +H
Sbjct: 186 EQDPSSEKSYQALRDTTHDLLDGMRYFDQAWKEH 219
>SB_31755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 641
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 307 EKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 408
E++P +K A +LLDG+ +FD+ +H
Sbjct: 189 EQDPSSEKSYQALRDTTHDLLDGMRYFDQAWKEH 222
>SB_17850| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 69
Score = 27.1 bits (57), Expect = 9.3
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3
Query: 279 EPAEAHRDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGRKES 431
E E + E+PA+GQR+ R + + L R + + DS++ D+ + ES
Sbjct: 19 EEEEKDEEKEEKPATGQRK-RKTSTQKQALTRKKSKQSDSED-EDEKKSES 67
>SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)
Length = 859
Score = 27.1 bits (57), Expect = 9.3
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +3
Query: 300 DSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAP-DRSYRSGEGKEQ 476
D+G +S R S ES E + + T +D D D R+ +++P D S R G+G +
Sbjct: 8 DNGVALSSMSSRQTSTESLEENIRKILTSCEDDDNEFLDRRRSTSSPEDVSNRKGKGSPK 67
Query: 477 IPERHRE 497
E ++
Sbjct: 68 EVENGKK 74
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,413,859
Number of Sequences: 59808
Number of extensions: 315453
Number of successful extensions: 1217
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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