Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20268
         (518 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosi...    50   8e-07
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    29   2.6  
Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AF106592-4|AAK21366.1|  786|Caenorhabditis elegans Hypothetical ...    28   4.6  
Z93383-3|CAB07625.1|  309|Caenorhabditis elegans Hypothetical pr...    27   6.1  
U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily ass...    27   6.1  
AF078790-14|AAC26930.1|  335|Caenorhabditis elegans Hypothetical...    27   8.0  
AF040645-7|AAB94977.2|  304|Caenorhabditis elegans Hypothetical ...    27   8.0  

>AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosin
           (four thymosin repeatprotein) protein 1 protein.
          Length = 151

 Score = 50.4 bits (115), Expect = 8e-07
 Identities = 23/48 (47%), Positives = 30/48 (62%)
 Frame = +1

Query: 283 QLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEK 426
           +LK  ET EKN LP K+ VA EK H   +  +EHFD T++  T  +EK
Sbjct: 23  ELKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEK 70



 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 26/61 (42%), Positives = 33/61 (54%)
 Frame = +1

Query: 253 IDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNP 432
           I  IE FDS++L  T  +EK  LP  D +  EK H  L D + +F    +K T T EKN 
Sbjct: 51  IHEIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNV 110

Query: 433 L 435
           L
Sbjct: 111 L 111



 Score = 38.7 bits (86), Expect = 0.002
 Identities = 24/54 (44%), Positives = 26/54 (48%)
 Frame = +1

Query: 256 DGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTT 417
           D I  F S  LK TET EKN LP    VA EK     L     FDK+ + H  T
Sbjct: 90  DKINNFPSENLKKTETIEKNVLPSPTDVAREKT----LQMAASFDKSALHHVET 139



 Score = 35.9 bits (79), Expect = 0.017
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = +2

Query: 101 PSLKDLP--KVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLSTVSRSL 274
           PS  D+   K   +L  ++  F +  L+  +T EK VLPS  DVA EKT +  ++  +S 
Sbjct: 74  PSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKTLQMAASFDKSA 133

Query: 275 I 277
           +
Sbjct: 134 L 134



 Score = 33.9 bits (74), Expect = 0.070
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +2

Query: 146 QLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLS 256
           ++E F+++ L      EKIVLPSA+D+  EK    L+
Sbjct: 53  EIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELT 89



 Score = 33.5 bits (73), Expect = 0.093
 Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +2

Query: 104 SLKDLPKVATDLKSQL-EGFNTSCLRDVDTNEKIVLPSAEDVATEK 238
           ++ +LPK+  +L   + EG     L+ V+T EK VLP+ EDVA EK
Sbjct: 3   AVTELPKMNQELAGAVREGLE---LKKVETTEKNVLPTKEDVAEEK 45


>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
            mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +3

Query: 288  EAHRDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGRKE 428
            E   +  E+    +   R  E  PEPL R      D DE  DDG ++
Sbjct: 2493 EDEEEEAEDDDQDEDDVRHVEQNPEPLARRLFEEDDDDEEDDDGDED 2539


>Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical
           protein C05C9.3 protein.
          Length = 1225

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +1

Query: 235 EDPEVFIDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 408
           ++ E  I  +E   S    H + ++KN   D ++   E   Q  L+G   F+  +MK+
Sbjct: 375 KEAEELISHLELESSQNSIHNDNRKKNEDYDMEISEIETITQRQLEGYGTFNSPEMKN 432


>AF106592-4|AAK21366.1|  786|Caenorhabditis elegans Hypothetical
           protein D1037.1 protein.
          Length = 786

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = +3

Query: 297 RDSGEEPASGQRRCRSGESPPEPLGRS*TLR-QDSDEAHDDGRKESTAPDRSYRSGEGKE 473
           +D   +    +R+ +   S  +  GR  +   +    + D  R    +P+RS RS E + 
Sbjct: 233 KDKNRKKEKTERKRKRSHSSSDRRGRRTSKESRRRSRSRDTHRTRRRSPERSRRSTETRN 292

Query: 474 QIPERHRELRS 506
           + PER    RS
Sbjct: 293 ERPERPSRWRS 303


>Z93383-3|CAB07625.1|  309|Caenorhabditis elegans Hypothetical
           protein F54B8.3 protein.
          Length = 309

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
 Frame = -3

Query: 453 DSFDRGQWILFFRR-----RVLHLSLVEVFNSVQEVLVGFLRC 340
           ++ DR Q I +F+R       LH+  VE++NS  + ++  LRC
Sbjct: 122 NTLDRYQNITYFKRFLKSEETLHVEEVEIWNSYVDDVMTILRC 164


>U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 213 protein.
          Length = 1437

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = +3

Query: 297  RDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQ 476
            ++S +EP +     ++   PP    R     + SDE      KES   D     GEGK++
Sbjct: 1244 KESKKEPTTEDGEVKTPSPPPAKKTRIVDRLKRSDEPSKKDEKES-PKDTESEKGEGKKR 1302

Query: 477  IPERHRELRSHKLK 518
              ER ++  + K K
Sbjct: 1303 -RERSKDKETGKEK 1315


>AF078790-14|AAC26930.1|  335|Caenorhabditis elegans Hypothetical
           protein F36H12.3 protein.
          Length = 335

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 387 RQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSHKLK 518
           + D+ +  DD +KE    D+  +  E KE+  E  +E +  + K
Sbjct: 154 KSDNKDDKDDEKKEEKKDDKEEKKEEKKEEKKEEKKEEKKEEKK 197


>AF040645-7|AAB94977.2|  304|Caenorhabditis elegans Hypothetical
           protein F52C6.11 protein.
          Length = 304

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +2

Query: 92  SDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDV 226
           S   S K+  KVA   K QLE    SCL  ++T E+I    A D+
Sbjct: 243 SSEKSTKEKLKVAK--KYQLENLKASCLAKINTLEEIKAALAGDL 285


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,286,823
Number of Sequences: 27780
Number of extensions: 229992
Number of successful extensions: 875
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)