Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20268
(518 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si... 31 0.47
At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containi... 29 2.5
At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f... 27 5.7
At1g67230.1 68414.m07652 expressed protein 27 5.7
At5g20540.1 68418.m02439 expressed protein 27 7.6
At5g16120.1 68418.m01883 hydrolase, alpha/beta fold family prote... 27 7.6
At4g15820.1 68417.m02407 wound-responsive protein-related contai... 27 7.6
At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 27 7.6
At1g49010.1 68414.m05495 myb family transcription factor contain... 27 7.6
>At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative
similar to sucrose-phosphate synthase isoform 1, Citrus
unshiu, PIR:S72648
Length = 894
Score = 31.1 bits (67), Expect = 0.47
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Frame = +2
Query: 17 RVAECTNLLSPSSSKIY*FRMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNE 196
R+A C P ++ F + S S + SL+D+ ++ +LK L+G + VDTN
Sbjct: 513 RIASCKQR-HPKWQRVE-FENSDSDSPSDSLRDINDISLNLKLSLDGEKSGSNNGVDTN- 569
Query: 197 KIVLPSAEDVATEK---TQKSLSTVSR 268
AED A E+ +K++ST+++
Sbjct: 570 ----LDAEDRAAERKAEVEKAVSTLAQ 592
>At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containing
protein contains Pfam profile PF01388: ARID/BRIGHT DNA
binding domain
Length = 786
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +2
Query: 86 SVSDTPSLKDLPKVATDLKSQLEGF---NTSCLRDVDTNEKIVLPSAEDVATEKTQKS 250
S+ + + DLPK+ + SQ E + S +DT E ++ P+AED E S
Sbjct: 78 SLEEVTNADDLPKIDDEKNSQFETSPHPSPSPSVALDTEEGLINPTAEDTVEENIVSS 135
>At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase
family protein / UPP synthetase family protein contains
putative undecaprenyl diphosphate synthase domain
[PF01255]; similar to S. cerevisiae dehydrodolichyl
diphosphate synthetase (DEDOL-PP
synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
Length = 271
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 211 RKHNLFIGVDVTETAGVEAFELTLQVCGDLG 119
+KHNL IG+D AG + + LQ C ++G
Sbjct: 50 KKHNL-IGLDAGHRAGFISVKYILQYCKEIG 79
>At1g67230.1 68414.m07652 expressed protein
Length = 1132
Score = 27.5 bits (58), Expect = 5.7
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +1
Query: 253 IDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEE 423
I G EK S+ K ET++K L DK+++ KA L++ V ++ Q+ E+
Sbjct: 420 ISGREKALKSEEKALETEKKKLLEDKEIILNLKA---LVEKVSGENQAQLSEINKEK 473
>At5g20540.1 68418.m02439 expressed protein
Length = 384
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +2
Query: 89 VSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 235
++ TP + + T+ S +S RD D +E++ + +A DV E
Sbjct: 282 LNSTPKVSSISVAKTETSSIDASIRSSSSRDADRSEEMSVSNASDVDNE 330
>At5g16120.1 68418.m01883 hydrolase, alpha/beta fold family protein
similar to monoglyceride lipase from [Homo sapiens]
GI:14594904, [Mus musculus] GI:2632162; contains Pfam
profile PF00561: hydrolase, alpha/beta fold family
Length = 351
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 298 ETQEKNPLPDKDVVAAEKAHQNLLDG 375
E EK PDK +V E A+ +LL+G
Sbjct: 294 ELYEKAKSPDKKIVLYENAYHSLLEG 319
>At4g15820.1 68417.m02407 wound-responsive protein-related contains
weak similarity to KED [Nicotiana tabacum]
gi|8096269|dbj|BAA95789
Length = 460
Score = 27.1 bits (57), Expect = 7.6
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +2
Query: 62 IY*FRMACSV---SDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 202
I+ F+ C+V D+ + P+V++D EG N L DV+ NEKI
Sbjct: 92 IFAFQTVCAVLFLGDSTKSEKTPEVSSDS----EGNNLVLLEDVEMNEKI 137
>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 897
Score = 27.1 bits (57), Expect = 7.6
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = +3
Query: 300 DSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQI 479
+S ++ R R SP R SDE+ DD +++S++ ++ GK +
Sbjct: 794 ESSDDSKRKSRSRRRSVSPSPVRSRRKRSSPSSDESSDDSKRKSSSKRKNRSPSPGKSR- 852
Query: 480 PERHRELRS 506
RH RS
Sbjct: 853 -RRHVSSRS 860
>At1g49010.1 68414.m05495 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 314
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 483 QEFVLFLLRFDSFDRGQWILFFRRRVLHLSLVEVFNSVQEVLV 355
+E LFLL D F +G W R V+ + +V + Q+ +
Sbjct: 139 EEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFI 181
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,845,616
Number of Sequences: 28952
Number of extensions: 220068
Number of successful extensions: 862
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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