Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20265
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    31   0.24 
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    29   0.55 
SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces pombe...    27   3.9  
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    26   6.8  

>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 614 CFWIPNFYSLHHFKDFFINFFYVLIISFNVIY-TFILCVLT 733
           C W  N     + K FF+  FY+ + S  V+Y TF+    T
Sbjct: 127 CMWFKNCVGFRNHKFFFLECFYLNLYSICVLYSTFVAITKT 167


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 626 PNFYSLHHFKDFFINFFYVLIISFNVIYTFILCVLTIYLKCI 751
           P++  +  F+D F+     L+   N +Y  +LCVL  Y +C+
Sbjct: 416 PDYARIATFEDKFVGAISSLVAEDNSLYVTVLCVLAPY-RCL 456


>SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -3

Query: 180 RKKKLPNLFINVATTFMKANSESTSMAERRLLIHG 76
           RK   P+L  +VA  F++  SE    A +++L+HG
Sbjct: 28  RKWTSPDLSEDVAQKFLETASEMKFDASKQVLVHG 62


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 409 FEFGYLVM*IV*RRVFLINQHGDFILFHYEHAK 507
           F  G++V+ +    +F+I+QH     F+YEH K
Sbjct: 617 FNRGFIVV-VHGNNLFIIDQHASDEKFNYEHLK 648


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,815,065
Number of Sequences: 5004
Number of extensions: 53576
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)