Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20265
         (764 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0483 - 29391929-29392256,29393048-29393148,29393640-293938...    34   0.14 
11_01_0762 + 6400052-6401845,6401977-6402609                           30   2.3  
09_03_0218 + 13539481-13540082,13540171-13540276,13540645-135409...    28   9.4  

>02_05_0483 -
           29391929-29392256,29393048-29393148,29393640-29393834,
           29394124-29394240,29394376-29394447,29394840-29394950,
           29395029-29395127,29395991-29396047,29396607-29397008,
           29397249-29397303,29397725-29397809,29398023-29398130,
           29398229-29398295,29398717-29398875,29399277-29399405
          Length = 694

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +3

Query: 468 TWRFYFISL*TCQMCLFVCNCVRRSF 545
           T+ FY   L  CQ+ LFVC+C  RSF
Sbjct: 475 TYSFYNFDLGYCQVSLFVCSCSERSF 500


>11_01_0762 + 6400052-6401845,6401977-6402609
          Length = 808

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = +2

Query: 665 INFFYVLIISFNVIYTFILCVL 730
           ++FFYVL++   V+Y F++C+L
Sbjct: 96  LDFFYVLVLCQCVLYCFLICLL 117


>09_03_0218 +
           13539481-13540082,13540171-13540276,13540645-13540960,
           13541187-13541263,13541269-13541895,13542783-13543112,
           13543442-13543747,13543824-13543896,13544004-13544089,
           13544219-13544396,13545311-13545756
          Length = 1048

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = +3

Query: 444 AACLFNKPTWRFYFISL*TCQMCLFVCNCVRRSFTD*S*IPR-PF-QKC---S*ISRVVL 608
           AAC+ NK            C  C  +CNC R + +D S  PR PF ++C   S + R V 
Sbjct: 195 AACIKNKYPEMQQAEVRDKCPFCRNICNCTRCNPSDKSDGPRNPFVRRCNSSSSVKRRVK 254

Query: 609 LAVSGFQ 629
            A SG +
Sbjct: 255 TAASGLR 261


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,404,373
Number of Sequences: 37544
Number of extensions: 324133
Number of successful extensions: 519
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)