Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20265
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U56963-12|AAB38128.1|  341|Caenorhabditis elegans Serpentine rec...    30   1.6  
AL110487-6|CAB54433.2|  472|Caenorhabditis elegans Hypothetical ...    29   4.8  
Z74041-5|CAA98516.2|  354|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U61946-2|AAC24387.1|  341|Caenorhabditis elegans Serpentine rece...    28   8.4  
U39849-1|AAA81045.2|  332|Caenorhabditis elegans Serpentine rece...    28   8.4  
AF022971-13|AAG23979.1|  325|Caenorhabditis elegans Serpentine r...    28   8.4  

>Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical
           protein F08H9.12 protein.
          Length = 320

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
 Frame = +2

Query: 614 CFWIPNFYSLHHF-----KDF-FINFFYVLII-SFNVIYTFILCVLTIYL 742
           C  IP ++ +H+      KDF  + FFY +++ S+ +  TFIL  + +YL
Sbjct: 30  CLIIPFYFYVHNLNWHKEKDFPIVQFFYKMVLFSYFLFSTFILYFIVLYL 79


>U56963-12|AAB38128.1|  341|Caenorhabditis elegans Serpentine
           receptor, class v protein33 protein.
          Length = 341

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
 Frame = +2

Query: 605 ASCCFWIPN-FYSLHHFKDFFINF--FYVLIISFNVIYTF--ILCVLTIYLKCIFYFI 763
           A   F++ N   ++   ++FF N+  FY+   S+N IY F  I C   I+L    YF+
Sbjct: 65  AMLIFFVTNPMRTIPLIREFFFNYQSFYIAAASYNSIYYFLYIRCTGIIFLSLQRYFV 122


>AL110487-6|CAB54433.2|  472|Caenorhabditis elegans Hypothetical
           protein Y39E4B.7 protein.
          Length = 472

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +2

Query: 614 CFWIPNFYSLHHFKDFFINFFYVLIISFNVIYTFILCVLTIY 739
           C W+ N     +++ FF   F++  +S +++Y F LC   ++
Sbjct: 133 CPWVHNCVGKRNYRYFF---FFLCSLSIHMMYVFFLCFAYVW 171


>Z74041-5|CAA98516.2|  354|Caenorhabditis elegans Hypothetical
           protein T03F7.2 protein.
          Length = 354

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = +3

Query: 357 FRLILFYYNHSIVNVPTF*VRLFSNVNCLAACLFNKPTWRFYFISL*TCQ 506
           + ++  YYN ++ N+    + L+     +     +KP  +F F S  +CQ
Sbjct: 280 YSMLSGYYNQALNNISFVTITLYGATATITMIFLHKPYKKFVFSSFPSCQ 329


>U61946-2|AAC24387.1|  341|Caenorhabditis elegans Serpentine
           receptor, class h protein220 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 611 CCFWIPNFYS--LHHFKDFFINFFYVLIISFNVIYTFILCVL 730
           C  W+P  Y   +  F     NF YVL+ +  ++ T ++ V+
Sbjct: 257 CIIWVPIIYYTFIGFFNAAINNFMYVLMATHGLVSTLVMLVV 298


>U39849-1|AAA81045.2|  332|Caenorhabditis elegans Serpentine
           receptor, class h protein39 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +3

Query: 357 FRLILFYYNHSIVNVPTF*VRLFSNVNCLAACLFNKP 467
           F  +L Y N  +VN+ T  + L  ++  ++    N+P
Sbjct: 263 FSFLLLYRNQVLVNISTIIISLHGSITSISTIAINRP 299


>AF022971-13|AAG23979.1|  325|Caenorhabditis elegans Serpentine
           receptor, class h protein247 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 363 LILFYYNHSIVNVPTF*VRLFSNVNCLAACLFNKPTWRFYFISL*TC 503
           ++ +YYN  + N+      +F    C+   L +KP +R + ISL  C
Sbjct: 262 VVFWYYNQVLNNIMCLMFSMFGLETCVVMILVHKP-YREFAISLILC 307


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,502,303
Number of Sequences: 27780
Number of extensions: 298410
Number of successful extensions: 680
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)