Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20265
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04270.1 68418.m00419 zinc finger (DHHC type) family protein ...    30   1.9  
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p...    29   3.4  
At1g66020.1 68414.m07493 terpene synthase/cyclase family protein...    28   7.8  

>At5g04270.1 68418.m00419 zinc finger (DHHC type) family protein low
           similarity to Golgi-specific DHHC zinc figer protein
           [Mus musculus] GI:21728103; contains Pfam profile
           PF01529: DHHC zinc finger domain
          Length = 284

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 614 CFWIPNFYSLHHFKDFFINFFYVLIISFNVIYTFILCV 727
           C WI N     ++K FFI  FY  + S   IY+ +L V
Sbjct: 135 CLWINNCVGYANYKAFFILVFYATVAS---IYSTVLLV 169


>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
           subunit, putative similar to contains 6 WD-40 repeats
           (PF00400); katanin p80 subunit (GI:3005601)
           [Strongylocentrotus purpuratus]
          Length = 974

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/55 (27%), Positives = 32/55 (58%)
 Frame = -2

Query: 550 SVKERLTQLHTNRHIWHVHSEIK*NRHVGLLKRHAAKQFTLLNNRTQKVGTLTIE 386
           +++ RLT+L   RH W   S++K    +G L++   +   +++  T+K+  LT++
Sbjct: 817 TLQSRLTKLQIVRHFWE-RSDVK--GAIGALRKLTDQSVDVISILTEKIEILTLD 868


>At1g66020.1 68414.m07493 terpene synthase/cyclase family protein
           contains Pfam profile: PF01397: Terpene synthase family
          Length = 598

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 647 HFKD-FFINFFYVLIISFNVIYTFILCVLTIYLKCI 751
           +F+D   +N+FYVL + +   +++   +LT Y  C+
Sbjct: 311 YFRDNIVVNYFYVLAVIYTPQHSYERIMLTQYFTCL 346


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,292,726
Number of Sequences: 28952
Number of extensions: 267148
Number of successful extensions: 515
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)