Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20264
(657 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 29 0.78
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip... 27 3.1
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 27 3.1
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 26 4.2
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 26 5.5
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 5.5
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 26 5.5
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 25 7.3
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 25 7.3
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 25 7.3
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 7.3
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 25 9.6
SPBC2G5.04c |||COPII-coated vesicle component Erv41 |Schizosacch... 25 9.6
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 25 9.6
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 28.7 bits (61), Expect = 0.78
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 105 NSETEEDYKRSVQTLPRKLHDRKEKATE--KPSSNKYWHRLTPNKRAAS 245
NS+ E Y++S L +E+ T +PS K H PN++AAS
Sbjct: 461 NSQVREVYRKSFWKLSEYFPSVQEELTNTLEPSVLKQLHLANPNRQAAS 509
>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
antiporter Sod22|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 60 STLGRFSHSTSRLNP-NSETEEDYKRSVQTLPRKLHDRKEKATEKPSSNKY 209
S+ + S R +P N + +ED S +LP H R+E+A E P Y
Sbjct: 478 SSANSIASSIRRRHPVNIQEDEDADISTVSLPEAAHLREERA-ESPRGGHY 527
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 26.6 bits (56), Expect = 3.1
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -2
Query: 278 KLHWRYWRVSSACRTFIWCESVP 210
K HWRY+ ++ C W ++ P
Sbjct: 868 KSHWRYFWINPHCEMLCWSKTNP 890
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 78 SHSTSRLNPNSETEEDYKRSVQTLPRKLHDRKEKATEKPSSNKY 209
S S S SE+EE+ S ++ P + EK KP+ K+
Sbjct: 110 SESESESEEESESEEESDESERSGPSSFLKKPEKEEAKPAGLKF 153
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +3
Query: 84 STSRLNPNSETEEDYKRSVQTLPRKLHDRKEKATEKPSSNK 206
ST + + S +R + T+P+ DRK++A +K +
Sbjct: 8 STKQQHYRSSDPYSGRRPIPTIPKFFRDRKQRAEKKEEQQR 48
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 5.5
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = -3
Query: 646 IKRLAIAIRM----SISMGYSFSIPGSKQTIPSPFSFTGN 539
IKR +I RM S MG SFS GS+ T P+ F N
Sbjct: 497 IKRKSIMERMGRPTSPFMGSSFSNMGSRSTSPTKEGFASN 536
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +3
Query: 96 LNPNSETEEDYKRSVQTLPRKLHDRKEKATEKPSSNKYWHRLTPNKRAASAAN 254
L +E E K +++LP K +KA +K SS + TP + SA N
Sbjct: 54 LERKAERERLEKEEMESLPSKGGKGSKKAAKKNSSLDAFLNETPQTASYSARN 106
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 25.4 bits (53), Expect = 7.3
Identities = 7/24 (29%), Positives = 17/24 (70%)
Frame = +1
Query: 178 KPPRSRVQTNIGTDSHQINVRQAL 249
+PP ++ N+G++SH +++A+
Sbjct: 2 RPPDDQINNNVGSNSHLEKLKEAM 25
>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 386
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/42 (26%), Positives = 17/42 (40%)
Frame = +2
Query: 530 ADAVSRETERRRDGLFGARYGKTVPHTNGHTNGYSKSFDDTD 655
A+ +++ R YG T+ G Y FDDT+
Sbjct: 40 AETLNKTARRLNRQTLDEEYGSTIRPNEGEAANYGIYFDDTE 81
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 25.4 bits (53), Expect = 7.3
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 81 HSTSRLNPN-SETEEDYK-RSVQTLPRKLHDRKEKATEKPSSNK 206
HST + ETEE+ K RS + L + + +EKA EK +
Sbjct: 21 HSTKTSHDQFEETEEEIKKRSPEELKQAIEALREKAKEKKEKER 64
>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 380 QQTHPRYISSMNRNYSTMY 436
Q HP YISS+N NY T +
Sbjct: 166 QSAHP-YISSLNSNYPTTW 183
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 477 AIEEPRNRVYKNRSQRDSLMLFPVK 551
AI P N+ + N QR+S L P K
Sbjct: 403 AITSPNNQQFLNNQQRESAPLLPRK 427
>SPBC2G5.04c |||COPII-coated vesicle component Erv41
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 333
Score = 25.0 bits (52), Expect = 9.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 590 HTGLQTDHPFSFQFH 546
H G DHPF+FQ++
Sbjct: 211 HYGHANDHPFAFQYY 225
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -3
Query: 643 KRLAIAIRMSISMGYSFSIPGSKQTIPSPFSFTGNSISESR 521
K+L ++ + GY + PG +P S GN I E +
Sbjct: 321 KKLKVSSSLPTQPGYEITYPGFGMPLPKNPSQRGNMIIECK 361
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,811,498
Number of Sequences: 5004
Number of extensions: 58671
Number of successful extensions: 173
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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