Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20264
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0202 + 15416040-15416196,15416229-15416482                       28   5.7  
10_02_0197 + 6596197-6596402,6596766-6596828,6599679-6599795,660...    27   9.9  
01_07_0372 + 43134296-43134910                                         27   9.9  
01_06_0040 - 25874308-25874611,25875743-25875822,25876764-258769...    27   9.9  

>03_03_0202 + 15416040-15416196,15416229-15416482
          Length = 136

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +3

Query: 105 NSETEEDYKRSVQTLPRKLHDRKEKATEKPSSNKYWHRLTPNKRAASAA 251
           +SE EE+ +  V+     +HD K   T K ++ ++  + + N RA + A
Sbjct: 3   HSEEEEEEEERVEGDGGGVHDSKNSCTAKSTNTRFRTKCSKNARAHTCA 51


>10_02_0197 +
           6596197-6596402,6596766-6596828,6599679-6599795,
           6600311-6600545,6600771-6600929,6601159-6601310,
           6602511-6602571
          Length = 330

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 608 YGVQFFHTGLQTDHPFSFQFHGKQHQRVSLATIFIDTIP 492
           +G  FF+  +    P S  F+G +    S A IFI+ IP
Sbjct: 80  FGWIFFNAFIGYAVPMSLYFYGLKDTTASYAVIFINIIP 118


>01_07_0372 + 43134296-43134910
          Length = 204

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +2

Query: 254 LSNNANATLDVKINGY-PPGPAKPARTYKALNRSKSFAMGAPEQQTHPRYISSMNRNYST 430
           LS ++ A+  + ++G+ PP    PART  +  + K+ A  + +Q   P   S    N S 
Sbjct: 16  LSCSSAASTSIVLSGHSPPHLRDPARTSNSSKKKKTKANKSKQQLVSPASSSRFLLNSSR 75

Query: 431 MYKS 442
           M  S
Sbjct: 76  MQPS 79


>01_06_0040 -
           25874308-25874611,25875743-25875822,25876764-25876996,
           25877285-25877354
          Length = 228

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 25/77 (32%), Positives = 35/77 (45%)
 Frame = +3

Query: 111 ETEEDYKRSVQTLPRKLHDRKEKATEKPSSNKYWHRLTPNKRAASAANSPITPMQL*TLK 290
           E EE+        P+KL   KE++     S +  H LTP ++ A A    + P Q+    
Sbjct: 63  EDEEERGVGGPHRPKKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQV---- 118

Query: 291 *TVTHQDLLSRRGRTKL 341
             V  Q   +RR RTKL
Sbjct: 119 -EVWFQ---NRRARTKL 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,761,883
Number of Sequences: 37544
Number of extensions: 383435
Number of successful extensions: 1101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)