Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20264
         (657 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22860| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.47 
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.62 
SB_11496| Best HMM Match : DUF408 (HMM E-Value=7.3e-07)                29   2.5  
SB_8812| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.4  
SB_55255| Best HMM Match : DSL (HMM E-Value=3.1)                       28   5.8  
SB_18306| Best HMM Match : TAT_ubiq (HMM E-Value=1.8)                  28   5.8  
SB_193| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   5.8  
SB_5722| Best HMM Match : Ion_trans (HMM E-Value=0)                    28   5.8  
SB_4563| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.8  
SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31)                   28   7.7  
SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             28   7.7  
SB_12754| Best HMM Match : Vicilin_N (HMM E-Value=0.49)                28   7.7  

>SB_22860| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 682

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = +3

Query: 18  GHDAREHRD-RGQFSSTLGRFSHSTSRLNPNSETEEDYKRSVQTLPRKLHDRKEKATEKP 194
           G++ R+ +D     +  L R   + S+L+     EE+Y R V  LP   +      T+  
Sbjct: 387 GNETRDGQDPENNNAKKLVRPEAAESKLHRELNNEENYTRHVARLPENNNQLSPPLTQLS 446

Query: 195 SSNKYWHRLTPNKRAASAANS 257
           S  K W  +    R+ S+ N+
Sbjct: 447 SPTKSWCAMDNVHRSLSSPNT 467


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = +3

Query: 30  REHRDRGQ--FSSTLGRFSHSTSRLNPNSETEEDYKRSVQTLPRKLHDRKEKATEKPSSN 203
           R+ RD+G+    S     S S+S     S + +  KRS    PR+    +E+    P   
Sbjct: 607 RKSRDKGRKRSQSRSSSRSRSSSYSRSRSRSPDRRKRSYSPPPRRRSPFRERRRSPPRRT 666

Query: 204 KYWHRLTPNKRAASAANS 257
             W   +P++R+ +   S
Sbjct: 667 SRWSSQSPDRRSPARIKS 684


>SB_11496| Best HMM Match : DUF408 (HMM E-Value=7.3e-07)
          Length = 825

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/74 (25%), Positives = 31/74 (41%)
 Frame = +3

Query: 9   GTAGHDAREHRDRGQFSSTLGRFSHSTSRLNPNSETEEDYKRSVQTLPRKLHDRKEKATE 188
           GTA H+ REH + G F     R  +S        +    +K+     P  ++  KEK  +
Sbjct: 711 GTALHERREHGNVGTFVEF--RIENSARTQKTEEKPVTRHKKGEDDWPMGINHGKEKQAK 768

Query: 189 KPSSNKYWHRLTPN 230
           +  + +  H  T N
Sbjct: 769 EKQTKEVIHTETKN 782


>SB_8812| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 604

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 210 WHRLTPNKRAASAANSPITP 269
           W R+TP  R  S  +SP+TP
Sbjct: 517 WRRVTPPSRGKSVQSSPVTP 536


>SB_55255| Best HMM Match : DSL (HMM E-Value=3.1)
          Length = 204

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 84  STSRLNPNSETEEDYKRSVQTLPRKLHDRKEKATEKPSSNKYWH 215
           + S + PNS +E   KR    L   +HD+ E+  E   +   W+
Sbjct: 117 AASGIAPNSSSERQCKREEMRLGTAIHDKLEQIHEFDINEMKWY 160


>SB_18306| Best HMM Match : TAT_ubiq (HMM E-Value=1.8)
          Length = 272

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 260 WRVSSACRTFIWCESVPIFV*TRL 189
           WR+    R+F WC S  +++ TRL
Sbjct: 201 WRLLKMLRSFFWCPSSTMYMETRL 224


>SB_193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1816

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 591  PYRAPNRPSLLLSVSRETASASLVGYDF 508
            PYRAP+ P L     RET   ++ G DF
Sbjct: 1587 PYRAPDAPPLTSLRLRETRPFAVTGVDF 1614


>SB_5722| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1236

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
 Frame = +3

Query: 24   DAREHRDRGQFSSTLG-RFSHSTSRLNPNSETEEDY----KRSVQTLPR--KLHDRKEKA 182
            D  E  D G+    L  RFS   SR  PN  T +DY     R    + R  ++H  K+K 
Sbjct: 1062 DDVEEEDMGELMQRLSDRFSGKNSRNEPNVTTVKDYFYFENRMASVIQRTFRIHLLKKKI 1121

Query: 183  TEKPSS--NKYWHRLTPNKR 236
             E  ++  +KY H    N++
Sbjct: 1122 EEHCNAKFHKYDHVSDSNEK 1141


>SB_4563| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1473

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
 Frame = +3

Query: 9    GTAGHDAREHRDRGQ-FSSTLGRFSHSTSR---LNPNSETEEDYKRSVQTLPRKLHDRKE 176
            GTA  DAR  R+ G+   ST  +     ++     P  + +E  +  V  +P    D + 
Sbjct: 974  GTASADARSQREMGEPQGSTSAQPDEQLAQELAQEPGKQHQEPARTPVAAVPAAARDTRI 1033

Query: 177  KATEKPSSNKYWHRLTPNKRAA 242
             + E P++  +  R+   +R A
Sbjct: 1034 TSPEPPATRPHPGRVEAGRRLA 1055


>SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31)
          Length = 996

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 141 QTLPRKLHDRKEKATEKPSSNK 206
           QT+  KLHD K+K +  PSS +
Sbjct: 59  QTMLAKLHDEKDKESSDPSSTR 80


>SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1120

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 55 NCPLSRCSRASCPAVPR 5
          +CPLS C+ A CP  PR
Sbjct: 10 DCPLSLCNYAGCPNKPR 26


>SB_12754| Best HMM Match : Vicilin_N (HMM E-Value=0.49)
          Length = 440

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +3

Query: 108 SETEEDYKRSVQTLPRKLHDRKEKATEKPSSNKYWHRLTPNKRAAS 245
           + T ++YK+ +++L  K    +EKA +K       H +   +RAA+
Sbjct: 323 NRTVQEYKKRLESLALKQRFDEEKARDKDIEANLAHEVNNQRRAAN 368


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,655,212
Number of Sequences: 59808
Number of extensions: 460162
Number of successful extensions: 1329
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)