Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20264
         (657 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    25   2.8  
AF510719-1|AAP47148.1|  591|Anopheles gambiae ammonium transport...    24   3.7  

>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 326 RTYKALNRSKSFAMGAPEQQTHPRYISSMNR 418
           RT   LNRS   A+ A ++Q H R +   ++
Sbjct: 600 RTLNLLNRSTDHALLAQKRQEHQRLVRECDK 630


>AF510719-1|AAP47148.1|  591|Anopheles gambiae ammonium
           transport-like protein protein.
          Length = 591

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -3

Query: 307 WWVTVYFNV*SCIGVIGELAALAARLFGVSRCQYLFELGFSVAFSL 170
           WW  + FN  S  GV G   A AAR   ++         FS+ +S+
Sbjct: 245 WWGWLAFNSGSTYGVSGAKWAYAARAAVMTMMGSFGGGSFSIIYSM 290


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 715,391
Number of Sequences: 2352
Number of extensions: 14531
Number of successful extensions: 250
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 65232180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)