Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20264
         (657 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88170-2|AAB42250.1|  203|Caenorhabditis elegans Hypothetical pr...    30   1.3  
U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z19155-4|CAA79560.3|  844|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U70845-5|AAB09103.1|  219|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U28733-1|AAA68302.2|  982|Caenorhabditis elegans Patched related...    28   5.1  
Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z75552-4|CAA99942.1|  624|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z49911-11|CAA90135.2|  452|Caenorhabditis elegans Hypothetical p...    27   8.9  
Z36948-6|CAA85414.2|  452|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AF039716-6|AAY55880.1|  215|Caenorhabditis elegans Hypothetical ...    27   8.9  

>U88170-2|AAB42250.1|  203|Caenorhabditis elegans Hypothetical
           protein C10G11.9 protein.
          Length = 203

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
 Frame = +2

Query: 302 PPGPAKPARTYKALNRSKSFAMGAPEQQTHPRYISSMN--RNYSTMYKSNPT*ANLMKHQ 475
           P   AK     ++ +RS+S + GA + ++  R +S  N  R+ ST    +P+   ++   
Sbjct: 22  PLAKAKRTVVSRSRSRSRSASRGARQSRSVGRPMSRRNSVRSISTHTAKSPSLVLVISGS 81

Query: 476 SN*RAQESCL*KS*PTR-LADAVSRETERRRDGLFGARYGKT 598
            + R +     +S   R +  +VSR ++ RR    G+ YG+T
Sbjct: 82  PSPRRRRPSTRRSSSRRSVVRSVSRGSKSRRSSSRGSVYGRT 123


>U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical
           protein T27A3.4 protein.
          Length = 203

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
 Frame = +2

Query: 302 PPGPAKPARTYKALNRSKSFAMGAPEQQTHPRYISSMN--RNYSTMYKSNPT*ANLMKHQ 475
           P   AK     ++ +RS+S + GA + ++  R +S  N  R+ ST    +P+   ++   
Sbjct: 22  PLAKAKRTVVSRSRSRSRSASRGARQSRSVGRPMSRRNSVRSISTHTAKSPSLVLVISGS 81

Query: 476 SN*RAQESCL*KS*PTR-LADAVSRETERRRDGLFGARYGKT 598
            + R +     +S   R +  +VSR ++ RR    G+ YG+T
Sbjct: 82  PSPRRRRPSTRRSSSRRSVVRSVSRGSKGRRSSSRGSVYGRT 123


>Z19155-4|CAA79560.3|  844|Caenorhabditis elegans Hypothetical
           protein F54G8.5 protein.
          Length = 844

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -3

Query: 358 TLASIQSFVRPRRLSRSWWVTVYFNV*SC-IGVIGELAALAARLFGVSRCQYLFELGFSV 182
           T+ SI   + PR +S    + + F + S  IGVIG LAA   RL  +S    +  +GFSV
Sbjct: 679 TMLSICVLMVPRPVSA---MCIAFAILSVNIGVIGALAATNTRLDIISMITIVMSVGFSV 735

Query: 181 AF 176
            +
Sbjct: 736 DY 737


>U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical
           protein T20F7.5 protein.
          Length = 1065

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +3

Query: 24  DAREHRDRGQFSSTLGRFSHSTSRLNPNSETEEDYKRSVQTLPRKLHDRKEKATEK 191
           D ++   R  FSS+  ++ HS +    +S  +E+ K   + L  KL+  K+K ++K
Sbjct: 809 DEQDGIGRSGFSSSCSKYQHSVA---SSSAEQEELKNLKKKLLNKLNKEKKKRSKK 861


>U70845-5|AAB09103.1|  219|Caenorhabditis elegans Hypothetical
           protein F22H10.6 protein.
          Length = 219

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
 Frame = +3

Query: 48  GQFSSTLGRFSHSTSRLNPNSETEEDYKRSVQ-TLPRKLHDRKEKATEKPSSNKYWHRLT 224
           G FSST+ R+ H + R     + +       Q  L RK    KE   +K +  + + + +
Sbjct: 38  GHFSSTIRRYHHVSEREAQRFQQQLRQPGCYQECLKRKTGTAKEVPAKK-AKEEIFAKPS 96

Query: 225 PNKRAASAANSPI-TPMQ 275
           P+K A SA    I TPM+
Sbjct: 97  PSKPAPSADTMGIETPME 114


>U28733-1|AAA68302.2|  982|Caenorhabditis elegans Patched related
           family protein 6 protein.
          Length = 982

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 271 IGVIGELAALAARLFGVSRCQYLFELGFSVAFS 173
           IGVIG L+  + +L  +S    +  +GFS+ FS
Sbjct: 829 IGVIGFLSLWSVKLDPISMITIIMSIGFSIEFS 861


>Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical
           protein ZK593.5 protein.
          Length = 1326

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 22/82 (26%), Positives = 31/82 (37%)
 Frame = +3

Query: 30  REHRDRGQFSSTLGRFSHSTSRLNPNSETEEDYKRSVQTLPRKLHDRKEKATEKPSSNKY 209
           RE  +  Q S    R S S S+  P     +  ++S+   P K          KPS +K 
Sbjct: 144 REFSNLSQSSVASSRASASASKPRPQFTAPDPRRQSLA--PPKKASTTTAPVSKPSLSKP 201

Query: 210 WHRLTPNKRAASAANSPITPMQ 275
              L P+K A      P+   Q
Sbjct: 202 RQSLAPSKPAEVTPQKPVPAAQ 223


>Z75552-4|CAA99942.1|  624|Caenorhabditis elegans Hypothetical
           protein W04D2.4 protein.
          Length = 624

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
 Frame = +3

Query: 477 AIEE--PRNRVYKNRSQRDSLMLFPV 548
           AI+E  PR RV+  +++RD LM FP+
Sbjct: 310 AIQEHWPRPRVFVGKNRRDHLMAFPL 335


>Z49911-11|CAA90135.2|  452|Caenorhabditis elegans Hypothetical
           protein D2089.1a protein.
          Length = 452

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/63 (23%), Positives = 27/63 (42%)
 Frame = +3

Query: 3   ARGTAGHDAREHRDRGQFSSTLGRFSHSTSRLNPNSETEEDYKRSVQTLPRKLHDRKEKA 182
           +R     D +  R R +   +  R        + + + + D KRS    P K  D++++ 
Sbjct: 336 SRDNKDRDRKRSRSRDRRRRSKSRDRKRERSRSRSKDRKRDKKRSRSRSPEKRRDKEDRK 395

Query: 183 TEK 191
           TEK
Sbjct: 396 TEK 398


>Z36948-6|CAA85414.2|  452|Caenorhabditis elegans Hypothetical
           protein D2089.1a protein.
          Length = 452

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/63 (23%), Positives = 27/63 (42%)
 Frame = +3

Query: 3   ARGTAGHDAREHRDRGQFSSTLGRFSHSTSRLNPNSETEEDYKRSVQTLPRKLHDRKEKA 182
           +R     D +  R R +   +  R        + + + + D KRS    P K  D++++ 
Sbjct: 336 SRDNKDRDRKRSRSRDRRRRSKSRDRKRERSRSRSKDRKRDKKRSRSRSPEKRRDKEDRK 395

Query: 183 TEK 191
           TEK
Sbjct: 396 TEK 398


>AF039716-6|AAY55880.1|  215|Caenorhabditis elegans Hypothetical
           protein W03G9.9 protein.
          Length = 215

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 123 DYKRSVQTLPRKLHDRKEKATEKPSSNKYWHRLTPNKRAASA 248
           +++  V T+P+   + ++K  E+P   K W  +T  KRA +A
Sbjct: 89  NFRIKVITIPK---EHRQKTLEQPIRPKNWSPITDGKRAINA 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,705,485
Number of Sequences: 27780
Number of extensions: 334614
Number of successful extensions: 1098
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)