Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20264
         (657 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26610.1 68415.m03193 expressed protein  ; expression support...    31   0.89 
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l...    29   2.7  
At1g76360.1 68414.m08872 protein kinase, putative similar to pro...    28   4.8  
At1g53670.1 68414.m06107 transcription factor-related similar to...    28   4.8  
At3g42100.1 68416.m04322 AT hook motif-containing protein-relate...    28   6.3  
At2g33850.1 68415.m04155 expressed protein contains 1 transmembr...    28   6.3  
At5g20730.3 68418.m02464 auxin-responsive factor (ARF7) identica...    27   8.3  
At5g20730.2 68418.m02463 auxin-responsive factor (ARF7) identica...    27   8.3  
At5g20730.1 68418.m02462 auxin-responsive factor (ARF7) identica...    27   8.3  
At3g22440.1 68416.m02836 hydroxyproline-rich glycoprotein family...    27   8.3  
At3g16300.1 68416.m02057 integral membrane family protein contai...    27   8.3  
At3g05030.1 68416.m00546 sodium proton exchanger, putative (NHX2...    27   8.3  

>At2g26610.1 68415.m03193 expressed protein  ; expression supported
           by MPSS
          Length = 1249

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = -3

Query: 637 LAIAIRMSISMGYSFSIPG-SKQTIPSPFSFTGNSISESRWLRFL*TRFLGSSIALVFHQ 461
           LA A   S+S+  S S+   S  ++PSP S   ++++  RW      R L SS  L+   
Sbjct: 29  LAFASGSSVSLVDSRSLQLISSVSLPSPISCAFSTVTSVRWAPVPVQRDLFSSDLLIAVG 88

Query: 460 VCLGGIRLVHCRIVSV 413
             LG I LV  R+ SV
Sbjct: 89  DHLGRIALVDFRLCSV 104


>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
           SR protein (SRZ22) identical to RSZp22 protein
           [Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
           SR protein [Arabidopsis thaliana] GI:3435094; contains
           Pfam profiles PF00076: RNA recognition motif. (a.k.a.
           RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
           identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
          Length = 200

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
 Frame = +3

Query: 9   GTAGHDAREHRDRGQFSSTLGRFSHSTSRLNPNSETEEDY-KRSVQTLPRK-LHDRKEKA 182
           G  GH ARE R+RG    T  R S S SR  P       Y +RS     R     R+   
Sbjct: 105 GETGHFARECRNRG---GTGRRRSKSRSRTPPRYRRSPSYGRRSYSPRARSPPPPRRRSP 161

Query: 183 TEKPSSNKYWHRLTPNKRA 239
           +  P+  + + R  P  RA
Sbjct: 162 SPPPARGRSYSRSPPPYRA 180


>At1g76360.1 68414.m08872 protein kinase, putative similar to
           protein kinase APK1B, SWISS-PROT:P46573; contains
           protein kinase domain, Pfam:PF00069
          Length = 484

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +3

Query: 81  HSTSRL--NPNSETEEDYKRSVQTLPRKLHDRKEKATEKPSSNK 206
           H T+R   NP  E  ++  RSV+  PR+    K ++ E P   K
Sbjct: 72  HRTTRSVENPPREKPQEKTRSVENPPREKPQEKTRSVETPPQEK 115


>At1g53670.1 68414.m06107 transcription factor-related similar to
           pilin-like transcription factor [Homo sapiens]
           GI:5059062; contains Pfam profile PF01641: SelR domain
          Length = 202

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/52 (23%), Positives = 28/52 (53%)
 Frame = +3

Query: 108 SETEEDYKRSVQTLPRKLHDRKEKATEKPSSNKYWHRLTPNKRAASAANSPI 263
           S +E ++K+ +   P + +  ++K TE+  + +YW+  TP        ++P+
Sbjct: 72  SLSENEWKKRLT--PEQYYITRQKGTERAFTGEYWNSKTPGVYNCVCCDTPL 121


>At3g42100.1 68416.m04322 AT hook motif-containing protein-related
            very low similarity to SP|Q9UUA2 DNA repair and
            recombination protein pif1, mitochondrial precursor
            {Schizosaccharomyces pombe}; weak hit to Pfam profile
            PF02178: AT hook motif
          Length = 1752

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 385  DPSSLHIVNEPKLF 426
            DPS LH++N+PK F
Sbjct: 1522 DPSELHMINDPKFF 1535


>At2g33850.1 68415.m04155 expressed protein contains 1 transmembrane
           domain; similar to Protein E6 (Swiss-Prot:Q01197)
           [Gossypium hirsutum]
          Length = 267

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +3

Query: 78  SHSTSRLNPNSETEEDYKRSVQTLPR--KLHDRKEKATEKPSSNKY 209
           S ST  L+  ++T+E YK   ++ P+  +++D  +  +   +SN Y
Sbjct: 102 SFSTPSLSETAQTQESYKNYKESYPKTTEIYDNNKDTSYYENSNAY 147


>At5g20730.3 68418.m02464 auxin-responsive factor (ARF7) identical
           to auxin response factor 7 GI:4104929 from [Arabidopsis
           thaliana]
          Length = 1150

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 90  SRLNPNSETEEDYK-RSVQTLPRKLHDRKEKATEKPSSNKYWHRLTPNKRAASAANSPIT 266
           S  +P  +  + +K + +Q    +L++ ++ A +  S     H L P   + S A+S IT
Sbjct: 591 SHSHPQPQQLQQHKLQQLQVPQNQLYNGQQAAQQHQSQQASTHHLQPQLVSGSMASSVIT 650

Query: 267 P 269
           P
Sbjct: 651 P 651


>At5g20730.2 68418.m02463 auxin-responsive factor (ARF7) identical
           to auxin response factor 7 GI:4104929 from [Arabidopsis
           thaliana]
          Length = 1164

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 90  SRLNPNSETEEDYK-RSVQTLPRKLHDRKEKATEKPSSNKYWHRLTPNKRAASAANSPIT 266
           S  +P  +  + +K + +Q    +L++ ++ A +  S     H L P   + S A+S IT
Sbjct: 590 SHSHPQPQQLQQHKLQQLQVPQNQLYNGQQAAQQHQSQQASTHHLQPQLVSGSMASSVIT 649

Query: 267 P 269
           P
Sbjct: 650 P 650


>At5g20730.1 68418.m02462 auxin-responsive factor (ARF7) identical
           to auxin response factor 7 GI:4104929 from [Arabidopsis
           thaliana]
          Length = 1165

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 90  SRLNPNSETEEDYK-RSVQTLPRKLHDRKEKATEKPSSNKYWHRLTPNKRAASAANSPIT 266
           S  +P  +  + +K + +Q    +L++ ++ A +  S     H L P   + S A+S IT
Sbjct: 591 SHSHPQPQQLQQHKLQQLQVPQNQLYNGQQAAQQHQSQQASTHHLQPQLVSGSMASSVIT 650

Query: 267 P 269
           P
Sbjct: 651 P 651


>At3g22440.1 68416.m02836 hydroxyproline-rich glycoprotein family
           protein identical to hydroxyproline-rich glycoprotein
           [Arabidopsis thaliana] gi|9293881|dbj|BAB01784
          Length = 532

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
 Frame = +3

Query: 57  SSTLGRFSHSTSRLNPNS-----ETEEDYKRSVQTLPRKLHDRKEKATEKPSSNKYWHRL 221
           SS  GR +H  +R   ++     +  E+YK   +  P  L  R ++  +  +  +    +
Sbjct: 356 SSNTGRATHLVARKEQSALKAVLKCIEEYKLEEEFPPENLKKRLDQLEKTKTEKRKPAAV 415

Query: 222 TPNKRAASAANSPITP 269
             NKR  ++ N P+ P
Sbjct: 416 PANKRTRASYNGPMPP 431


>At3g16300.1 68416.m02057 integral membrane family protein contains
           TIGRFAM TIGR01569 : plant integral membrane protein
           TIGR01569; contains Pfam PF04535 : Domain of unknown
           function (DUF588);  At2g38480, At1g45222 and others
           share this domain structure; distantly related to
           GP|14030504 salicylic acid-induced fragment 1 protein
           {Gossypium hirsutum}
          Length = 212

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 561 LLSVSRETASASLVGYDFYRHDSWAL 484
           L+  +RET+  +L G++F  H  W+L
Sbjct: 65  LMVTARETSMTTLYGFEFQLHAVWSL 90


>At3g05030.1 68416.m00546 sodium proton exchanger, putative (NHX2)
           similar to sodium proton exchanger Nhx1 GB:AAD16946
           [Arabidopsis thaliana]; Member of The Monovalent
           Cation:Proton Antiporter (CPA1) Family, PMID:11500563
          Length = 546

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 598 SFSIPGSKQTIPSPFSFTGNSISESRWLRFL*TRFLGSSIALVF 467
           SF +PGS Q +P P S  G  +  +R + +   +F  + +  VF
Sbjct: 479 SFELPGSHQDVPRPNSLRGFLMRPTRTVHYYWRQFDDAFMRPVF 522


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,922,335
Number of Sequences: 28952
Number of extensions: 312606
Number of successful extensions: 983
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)