Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20263
(756 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 31 0.18
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 28 1.7
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 2.2
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 27 2.9
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 27 3.8
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 27 3.8
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 5.0
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 8.8
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 8.8
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 8.8
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 8.8
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po... 25 8.8
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 8.8
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 25 8.8
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 31.1 bits (67), Expect = 0.18
Identities = 16/55 (29%), Positives = 20/55 (36%)
Frame = +2
Query: 272 PAEAHRDSGEEPASGQRRYRSGEGKEQIPERHRELRSH*AEAHGNVREELAPHKG 436
P H + GE + GE P +H EL H H E+ HKG
Sbjct: 313 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPFKHHELEEHEGPEHHRGPEDKEHHKG 367
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.9 bits (59), Expect = 1.7
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +1
Query: 40 SSSKIY*FRMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA 219
S SK+ +A S + ++ D P+ +T S L+ F+T + + + VLPS D
Sbjct: 26 SPSKVCRDNIALSEHNVITVLDTPQRSTQCDSLLKSFSTPLV----SGSEDVLPSPRDAL 81
Query: 220 TEKTQKSLFDGM 255
+KS+ D +
Sbjct: 82 NITNKKSVTDNL 93
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 27.5 bits (58), Expect = 2.2
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Frame = -2
Query: 704 SVFDRFMRPL-AVYGVRRDLSLGFE*NPGLLYAA-----IAQAVLPLYKNKNKTCN 555
S+FD + L VY VR+ SLGFE NP ++ + IA++++ L N+ ++ N
Sbjct: 744 SIFDLGLDSLDIVYFVRKIRSLGFEANPSIVLTSKVVFKIAESLILLKPNEVQSKN 799
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 27.1 bits (57), Expect = 2.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 330 EAEKEKNKFLNGIENFDPTKLKHTETCEKNSLPTKDVIEQEKSA 461
E EKE K ENF+ + + E E+ L +EQEK+A
Sbjct: 445 EMEKELQKIR---ENFEEERRRAIEVAEQRQLIVNHELEQEKNA 485
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/67 (23%), Positives = 29/67 (43%)
Frame = +3
Query: 255 EKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNSLPTK 434
+ FD +K +EK L + AE EK++ N +E+ + + N+ K
Sbjct: 74 KSFDEELVKFHNLEEKLQLTETKCRNAESEKSRVENELEDLTSSLFEEANRMVANA--RK 131
Query: 435 DVIEQEK 455
+ + EK
Sbjct: 132 ETVASEK 138
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -2
Query: 224 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 93
SV + DG + + +++RQ V+ P + F + +GR F+E
Sbjct: 86 SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -1
Query: 261 TSHTVE*RLLGLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQ 127
TS ++ G ++G +S +LFIGVD G+ F LQ
Sbjct: 377 TSQVID--FFGEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 339 KEKNKFLNGIENFDPTKLKHTETCEKN 419
K + K L G ++ DP L+ + CE+N
Sbjct: 307 KMQEKELEGSDSIDPILLEKIDVCEEN 333
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 233 WVFSVATSSADGSTIFSLVSTSRRQL 156
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 233 WVFSVATSSADGSTIFSLVSTSRRQL 156
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 233 WVFSVATSSADGSTIFSLVSTSRRQL 156
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +3
Query: 363 GIENFDPTKLKHTETCEKNSLPTKDVIEQE 452
G+E P + H T +NSLP E E
Sbjct: 380 GLEVISPKEFPHRTTSSRNSLPNNTTKELE 409
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 233 WVFSVATSSADGSTIFSLVSTSRRQL 156
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 236 FWVFSVATSSADGSTIFSLVSTSRRQLVLKPSS 138
FW +S+ S G I SL + RQ + +PSS
Sbjct: 83 FWGYSLTFSHEGGPYIGSLANFGLRQTLGRPSS 115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,093,506
Number of Sequences: 5004
Number of extensions: 65234
Number of successful extensions: 233
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -