Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20263
(756 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1577 - 27869596-27869682,27869769-27869869,27869956-278699... 30 2.3
06_01_0167 - 1302685-1302801,1315532-1315960 30 2.3
02_05_0599 - 30251708-30251815,30251864-30251984,30252068-302522... 29 3.0
09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222 29 4.0
05_01_0501 - 4184932-4185048,4185360-4185456,4185537-4185709,418... 29 4.0
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 29 4.0
04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539 29 5.3
07_03_1529 + 27491963-27492465,27493045-27493154,27493384-274935... 28 7.0
03_05_0070 - 20478396-20478505,20478605-20478780,20481162-204812... 28 9.2
02_03_0171 + 15945591-15945681,15947068-15947138,15947715-159478... 28 9.2
>07_03_1577 -
27869596-27869682,27869769-27869869,27869956-27869995,
27870879-27870953
Length = 100
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +1
Query: 124 DLKSQLEGFNTSCLRDVDTNEKIVL 198
DL+S+L+ NT CL + + N+K+++
Sbjct: 54 DLQSKLDAVNTECLAEKEKNKKLII 78
>06_01_0167 - 1302685-1302801,1315532-1315960
Length = 181
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = -1
Query: 432 LWGASSSRTFPCASA*WDRSSRCRSGICSFPSPLR*RLCPEAGSSPESRCASAGSNQTSH 253
LW SR +A DR R R IC + PE+ SPE S+ +++ SH
Sbjct: 112 LWAMDESRAETVLAA-QDREDRNRGKICKLEDKIP--SFPESPFSPEKSLKSSKASKASH 168
Query: 252 T 250
T
Sbjct: 169 T 169
>02_05_0599 -
30251708-30251815,30251864-30251984,30252068-30252215,
30252303-30252480,30252587-30252625,30252704-30252799,
30252879-30253030,30253336-30253722,30253836-30253940,
30254083-30254098
Length = 449
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +2
Query: 296 GEEPASGQRRYRSGEGKEQIPERHRELR--SH*AEAHG-NVREELAP 427
GEEPA R+G G P +HRE + SH + +G +R L P
Sbjct: 6 GEEPAHDFLSLRAGGGSSSPPFQHREEQHSSHSSRGYGMEIRRSLRP 52
>09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222
Length = 212
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +2
Query: 131 RVSSKASTPAVSVTSTPMKRLCFR 202
+VSS++S+P SVT+ ++ +CFR
Sbjct: 72 QVSSQSSSPVESVTTATLRPICFR 95
>05_01_0501 -
4184932-4185048,4185360-4185456,4185537-4185709,
4186225-4186305,4186959-4187072,4187177-4187497
Length = 300
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/58 (36%), Positives = 24/58 (41%)
Frame = -1
Query: 429 WGASSSRTFPCASA*WDRSSRCRSGICSFPSPLR*RLCPEAGSSPESRCASAGSNQTS 256
W A SS P A A R R+ P P R L A SS S A++ SN S
Sbjct: 3 WAALSSPPAPAAPAAVWMGRRARTARLPSPGPRRVVLAAAASSSSPSPDANSSSNSNS 60
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 86 TLPP*KTSPRSPQT*RVSSKASTPAVSVTST 178
TLPP + SP SP T SSK TP+ S S+
Sbjct: 31 TLPPGRLSPVSPLTHSSSSKLPTPSSSSGSS 61
>04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539
Length = 585
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 269 EPAEAHRDSGEEPASGQRRYRSGEGKEQ 352
+P A D E +G RR+RSG G++Q
Sbjct: 206 DPRAADDDHAEAARNGVRRWRSGSGQQQ 233
>07_03_1529 +
27491963-27492465,27493045-27493154,27493384-27493510,
27494082-27494430,27494975-27495251,27496236-27496333,
27498090-27498214,27498270-27498326,27498328-27498370,
27498581-27498667,27498802-27498882,27499735-27499901,
27499987-27500098,27500188-27500390,27500473-27500607,
27501106-27501205
Length = 857
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +3
Query: 288 ETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNSLPTKDVI 443
+T + PLP D+IEA + + + +E KL ++ E S D +
Sbjct: 806 QTLDTTPLPGSDSIEANRRRERGQRALEQRLAEKLAAVKSSEGTSQDASDKV 857
>03_05_0070 -
20478396-20478505,20478605-20478780,20481162-20481265,
20481346-20481504,20481718-20481857,20482222-20482311,
20482902-20482970,20484295-20484516,20486175-20486293,
20486377-20486492,20488058-20488146,20488790-20488883
Length = 495
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 100 KDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 192
K+L + DLKS+LEG+NT D++ + +
Sbjct: 266 KELDERRHDLKSELEGYNTGDSDDINKKKAL 296
>02_03_0171 +
15945591-15945681,15947068-15947138,15947715-15947817,
15948189-15948328,15948535-15948693,15948775-15948878,
15950373-15950548,15952643-15952832,15953704-15953803,
15954171-15954339,15954908-15954990,15955073-15955149,
15955386-15955557
Length = 544
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 100 KDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 192
K+L + DLKS+LEG+NT D++ + +
Sbjct: 88 KELDERMHDLKSELEGYNTGDSDDINKKKAL 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,168,071
Number of Sequences: 37544
Number of extensions: 443210
Number of successful extensions: 1320
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1319
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -