Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20263
(756 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46525| Best HMM Match : Thymosin (HMM E-Value=0) 71 1e-12
SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9) 36 0.027
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0) 33 0.33
SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26) 31 0.76
SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_58909| Best HMM Match : Renin_r (HMM E-Value=1.6e-05) 30 1.8
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91) 30 2.3
SB_20129| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_34021| Best HMM Match : Zip (HMM E-Value=0) 30 2.3
SB_29288| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_32651| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_23595| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_7539| Best HMM Match : Sulfatase (HMM E-Value=3.5e-05) 29 5.4
SB_52732| Best HMM Match : M (HMM E-Value=0.019) 28 7.1
SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21) 28 7.1
SB_16625| Best HMM Match : Death (HMM E-Value=1.5) 28 9.4
SB_35704| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01) 28 9.4
>SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)
Length = 750
Score = 70.5 bits (165), Expect = 1e-12
Identities = 33/68 (48%), Positives = 48/68 (70%), Gaps = 2/68 (2%)
Frame = +3
Query: 258 KFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIE--NFDPTKLKHTETCEKNSLPT 431
KFD++ LKH +T+EKN LP + I+ E + ++F + E +F+ +KL+H ET EKN+LPT
Sbjct: 416 KFDAANLKHVQTKEKNTLPSDETIKQELQPDEFPDRAEVKSFEKSKLQHVETKEKNTLPT 475
Query: 432 KDVIEQEK 455
KD I EK
Sbjct: 476 KDTIADEK 483
Score = 70.5 bits (165), Expect = 1e-12
Identities = 37/79 (46%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Frame = +3
Query: 231 PEVF--IRRYEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTE 404
PEV + FD+S+LKH E QEKNPLP KD I E + + ++ FD +KLKH +
Sbjct: 674 PEVLPDVSAVASFDASKLKHVEVQEKNPLPTKDDITTESTETR--AEVKTFDHSKLKHVQ 731
Query: 405 TCEKNSLPTKDVIEQEKSA 461
T EKN LP I QEK++
Sbjct: 732 TEEKNPLPDAKTIAQEKAS 750
Score = 67.3 bits (157), Expect = 1e-11
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Frame = +3
Query: 231 PEVFIRRYE--KFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTE 404
PEV R E KFD+S+LKH ET+EK +P KD IEAE ++ +++FD +KLKH
Sbjct: 522 PEVLPDRSEVAKFDTSKLKHVETKEKVVMPTKDVIEAEAIDSR--AEVKSFDHSKLKHVV 579
Query: 405 TCEKNSLPTKDVIEQE 452
T EKN LPT + +E
Sbjct: 580 TQEKNPLPTPQTLHEE 595
Score = 66.5 bits (155), Expect = 2e-11
Identities = 37/76 (48%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Frame = +3
Query: 231 PEVFIRRYE--KFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTE 404
P+ F R E F+ S+L+H ET+EKN LP KD I EK F +G+E F KLKH E
Sbjct: 445 PDEFPDRAEVKSFEKSKLQHVETKEKNTLPTKDTIADEKRTAPF-SGVEVFQKNKLKHVE 503
Query: 405 TCEKNSLPTKDVIEQE 452
T EKN LP I E
Sbjct: 504 TLEKNPLPDAQNIRAE 519
Score = 64.9 bits (151), Expect = 7e-11
Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Frame = +3
Query: 255 EKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKF--LNGIENFDPTKLKHTETCEKNSLP 428
+ FD S+LKH ET EKNPLP ++ E ++ + +FD +KLKH E EKN LP
Sbjct: 644 KSFDHSKLKHVETVEKNPLPSAAVLKEEMRPEVLPDVSAVASFDASKLKHVEVQEKNPLP 703
Query: 429 TKDVIEQEKS 458
TKD I E +
Sbjct: 704 TKDDITTEST 713
Score = 59.3 bits (137), Expect = 3e-09
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Frame = +3
Query: 255 EKFDSSQLKHTETQEKNPLPDKDAIEAEK-EKNK-FLNGIENFDPTKLKHTETCEKNSLP 428
+ FD S+LKH TQEKNPLP + E KNK + + +FD TKLKH T EK+ +P
Sbjct: 568 KSFDHSKLKHVVTQEKNPLPTPQTLHEELIPKNKPDRSEVASFDHTKLKHVTTQEKSIMP 627
Query: 429 TKDVIEQE 452
+++ I++E
Sbjct: 628 SQEDIKEE 635
Score = 57.6 bits (133), Expect = 1e-08
Identities = 27/64 (42%), Positives = 44/64 (68%)
Frame = +3
Query: 261 FDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNSLPTKDV 440
FD ++LKH TQEK+ +P ++ I+ E ++ +++FD +KLKH ET EKN LP+ V
Sbjct: 610 FDHTKLKHVTTQEKSIMPSQEDIKEEAVDSRA--EVKSFDHSKLKHVETVEKNPLPSAAV 667
Query: 441 IEQE 452
+++E
Sbjct: 668 LKEE 671
Score = 35.9 bits (79), Expect = 0.036
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +3
Query: 366 IENFDPTKLKHTETCEKNSLPTKDVIEQE 452
+ FD LKH +T EKN+LP+ + I+QE
Sbjct: 414 VAKFDAANLKHVQTKEKNTLPSDETIKQE 442
Score = 33.9 bits (74), Expect = 0.14
Identities = 15/40 (37%), Positives = 28/40 (70%)
Frame = +1
Query: 106 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 225
+P+V D +S++ F+TS L+ V+T EK+V+P+ + + E
Sbjct: 521 MPEVLPD-RSEVAKFDTSKLKHVETKEKVVMPTKDVIEAE 559
Score = 31.5 bits (68), Expect = 0.76
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +1
Query: 106 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 225
+PK D +S++ F+ + L+ V T EK ++PS ED+ E
Sbjct: 597 IPKNKPD-RSEVASFDHTKLKHVTTQEKSIMPSQEDIKEE 635
>SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)
Length = 413
Score = 36.3 bits (80), Expect = 0.027
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +1
Query: 94 SLKDLPKVATDLKSQLEGFNTSCL-RDVDTNEKIVLPSAEDVATEKTQKSLFDGMR 258
SLK L K+ TDL+S ++G ++ L ++V+ K+V + +T K + S F+ +
Sbjct: 333 SLKALAKICTDLESNIQGIKSNPLAKEVERTNKLVYEIFKKFSTSKVEASSFENSK 388
>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
Length = 1452
Score = 32.7 bits (71), Expect = 0.33
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = +3
Query: 261 FDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNSLPTKDV 440
+D Q K E PD+D +E E+E NG+E+ D K + + PT DV
Sbjct: 839 YDVKQRKRLEQHASYEAPDEDEMEIERE---LQNGLESGDEDDTKADAQRSETNSPTLDV 895
Query: 441 IEQE 452
Q+
Sbjct: 896 ETQQ 899
>SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)
Length = 1064
Score = 31.5 bits (68), Expect = 0.76
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 24 ESSIPFLIKNILIQNGLLRE*HSLPERPPQGRHRPEESARRLQHQ 158
E S+PF N QN ++ +P R PQG H + A+ +QH+
Sbjct: 224 EMSLPFKKHNTFRQNVDIK---GIPSRLPQGEHSDRKKAQEVQHK 265
>SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1028
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +2
Query: 419 LAPHKGRH*AREISLNHYFITVTRKCISLVRRILILM*VRSICVVHYKFYFCFCTMATLP 598
L+P + R +S F T +SL R ++ +R IC VH FY+C C +++
Sbjct: 22 LSPQRARQVFSLLS-RQPFRLATHVILSLESRDTLVAVLR-ICSVHLDFYYCTCVWSSMA 79
Query: 599 G 601
G
Sbjct: 80 G 80
>SB_58909| Best HMM Match : Renin_r (HMM E-Value=1.6e-05)
Length = 385
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = -1
Query: 231 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLGEVFQGGS 88
GLL+GD+F R K N+ I VD T G + FEL + + E+ GS
Sbjct: 74 GLLAGDIFRRPKANILISVDGV-TKG-DKFELPAKASFPVQEMAGLGS 119
>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
Length = 1249
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 76 SVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDV-DTNEKIVLPSAEDVAT 222
S SD P+ D A+D+KS + T DV T++ V PSA DV T
Sbjct: 617 SASDVPTTSDDQPSASDVKSTSDDQVTPPSSDVPTTSDDQVTPSASDVPT 666
>SB_20129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = -1
Query: 231 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFEL 136
GLL+GD+F R K N+ I VD T G + FEL
Sbjct: 51 GLLAGDIFRRPKANILISVDGV-TKG-DKFEL 80
>SB_34021| Best HMM Match : Zip (HMM E-Value=0)
Length = 808
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +3
Query: 219 H*EDPEVFIRRYEKFDSSQLKHTETQEKNPLPDKDAIEA 335
H +P+ + +E FDS LKH ++ N +P+ + +
Sbjct: 370 HEHEPKQDLYHHEDFDSYSLKHERVKQSNTVPNPSKVRS 408
>SB_29288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +3
Query: 279 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNSL 425
+HTE + +P P K I+ E +++ + I+ KH+ +CE+ +
Sbjct: 212 RHTENAKSSPDPIKSEIDGEHSEDEKEHKIKVCPLVDKKHSHSCERTHI 260
>SB_32651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 725
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = +3
Query: 258 KFDSSQLKHTETQEKNPLPDKDAIEAEK-----EKNKFLNGIENFDPTKLKHTETCEKNS 422
K+ SSQ+ ET++ K ++E+ EK N +N + TK +H++ EKN
Sbjct: 166 KYSSSQIDKLETKQAIKSKKKKRRKSEEKELLGEKVDQFNSKKNLNRTKERHSKKMEKNR 225
Query: 423 LPTKDVIEQEK 455
Q+K
Sbjct: 226 QDNSKTRSQQK 236
>SB_23595| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 281
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +3
Query: 303 NPLPDKDAIEAEKEKNK---FLNGIENFDPTKLKHTETCEKNSLPTKDVIEQ 449
N LPD + E+++ K ++G + + K CE NSLP K ++Q
Sbjct: 171 NNLPDSTCTQKERQRLKSERVVHGEAKHEQDQGKCPNNCEGNSLPQKAYVKQ 222
>SB_7539| Best HMM Match : Sulfatase (HMM E-Value=3.5e-05)
Length = 492
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 226 SQWRRLQQTEAQSFHWCRRHGDSWC*SLRADSSGLWRPW 110
S WRRLQ+ A S + + D +L A+ G W PW
Sbjct: 419 SLWRRLQELNATSLEYRLQPEDPRSIAL-AERLGRWEPW 456
>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
Length = 1366
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 97 LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 225
L DL +V +LKS+ EG CL D++ + DV E
Sbjct: 1125 LMDLSRVGEELKSENEGLQQKCL-DLEKQRDTIKQDLADVQKE 1166
>SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1045
Score = 28.3 bits (60), Expect = 7.1
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Frame = +3
Query: 231 PEVFIRRYEKFDSSQL--KHTETQEKNPL---PDKDAIEAEKEK-NKFLN--GIENFDPT 386
PE +Y+ FD ++ +TQEK PL DK+ EA + N+ + I N P
Sbjct: 366 PEAKQGKYD-FDPTETPASRDKTQEKQPLEKTKDKEKEEANRRSYNRMASYESIGNIGPE 424
Query: 387 KLKHTETCEKNSLPTKDV 440
K K ++CE K V
Sbjct: 425 KSKSAKSCESLKEAVKKV 442
>SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)
Length = 781
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 41 PHQKYIDSEWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTP 181
P + + E P P + L P T+ P+ V +ASTP S +P
Sbjct: 517 PRNSFAEYEKPLPTLPLSPTNTTTGRPRLSTVPPEASTPTDSFPKSP 563
>SB_16625| Best HMM Match : Death (HMM E-Value=1.5)
Length = 528
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +3
Query: 288 ETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNSLPTKDVIEQEKSA 461
+T E++P DK + L+G+ +FD K +H + K IEQ+ ++
Sbjct: 261 KTIEQDPTSDKSYKALRDTTHDLLDGLRDFDQAKEEHAKLIPKYHKIMIKTIEQDPTS 318
>SB_35704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 256
Score = 27.9 bits (59), Expect = 9.4
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = +3
Query: 225 EDPEVFIRRYEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENF 377
EDP+ IRRYE S + E+ K L +A E +E +FL E F
Sbjct: 109 EDPDYVIRRYE---SGRYASDESVRKEYLKVDEAKEELQEVVEFLRNPEKF 156
>SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01)
Length = 590
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +2
Query: 266 FEPAEAHRDSGEEPASGQRRYRSGEG 343
FEP E H DSG+E Y EG
Sbjct: 266 FEPMEIHDDSGDEDVDSDDDYDDREG 291
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,367,995
Number of Sequences: 59808
Number of extensions: 521582
Number of successful extensions: 1508
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1497
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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