Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20263
         (756 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosi...    57   1e-08
AC006684-10|AAF39962.2|  665|Caenorhabditis elegans Hypothetical...    29   4.7  
AF098996-4|AAC68705.1|  888|Caenorhabditis elegans Hypothetical ...    28   6.2  
AF022981-2|AAG24200.1|  236|Caenorhabditis elegans Hypothetical ...    28   6.2  
AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical ...    28   6.2  
Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr...    28   8.2  
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr...    28   8.2  
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosin
           (four thymosin repeatprotein) protein 1 protein.
          Length = 151

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 30/72 (41%), Positives = 41/72 (56%)
 Frame = +3

Query: 243 IRRYEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNS 422
           I   E FDS++L  T  +EK  LP  D I+ EK+  +  + I NF    LK TET EKN 
Sbjct: 51  IHEIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNV 110

Query: 423 LPTKDVIEQEKS 458
           LP+   + +EK+
Sbjct: 111 LPSPTDVAREKT 122



 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 29/61 (47%), Positives = 39/61 (63%)
 Frame = +3

Query: 273 QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNSLPTKDVIEQE 452
           +LK  ET EKN LP K+ +  EK+  + ++ IE+FD TKL  T   EK  LP+ D I+QE
Sbjct: 23  ELKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDIKQE 82

Query: 453 K 455
           K
Sbjct: 83  K 83



 Score = 35.1 bits (77), Expect = 0.054
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +1

Query: 136 QLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFD 249
           ++E F+++ L      EKIVLPSA+D+  EK    L D
Sbjct: 53  EIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTD 90



 Score = 33.9 bits (74), Expect = 0.13
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +1

Query: 91  PSLKDLP--KVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKT 231
           PS  D+   K   +L  ++  F +  L+  +T EK VLPS  DVA EKT
Sbjct: 74  PSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKT 122



 Score = 33.5 bits (73), Expect = 0.17
 Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +1

Query: 94  SLKDLPKVATDLKSQL-EGFNTSCLRDVDTNEKIVLPSAEDVATEK 228
           ++ +LPK+  +L   + EG     L+ V+T EK VLP+ EDVA EK
Sbjct: 3   AVTELPKMNQELAGAVREGLE---LKKVETTEKNVLPTKEDVAEEK 45


>AC006684-10|AAF39962.2|  665|Caenorhabditis elegans Hypothetical
           protein T02H6.2 protein.
          Length = 665

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = +3

Query: 258 KFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNSLPTKD 437
           K DSS++K ++T   NP    D I +++   +    +  F     K    C    LP  D
Sbjct: 551 KLDSSKVKPSQTSSPNPY--TDTILSDEHLTQLARDLSKFKSNLAK----CFGTKLPADD 604

Query: 438 VIEQEK 455
           V   EK
Sbjct: 605 VTSDEK 610


>AF098996-4|AAC68705.1|  888|Caenorhabditis elegans Hypothetical
           protein T11F1.8 protein.
          Length = 888

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +1

Query: 613 YSNPGFYSNPNDKSRLTP*TASG--RINRSNTDN*CIVTKFSMS 738
           Y NPG ++N N+K  +   T     RIN  + DN CI   F ++
Sbjct: 439 YDNPGLFAN-NEKCLMYQITYDYFIRINNQDCDNKCIFNHFELT 481


>AF022981-2|AAG24200.1|  236|Caenorhabditis elegans Hypothetical
           protein W03F9.2a protein.
          Length = 236

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 279 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIE--NFD 380
           KHTET+++ P  +K    A+K  N  L  +E  N+D
Sbjct: 192 KHTETEKEAPPQEKSVTNAQKPGNPALLSLESRNYD 227


>AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical
           protein Y55B1AL.3a protein.
          Length = 923

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +2

Query: 29  FYPLPHQKYIDSEWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLL 208
           F P+P    + +   +     P   TSP+SP +   S++   P VSVTS P ++      
Sbjct: 19  FSPIPKFSRLRTPRTSREYVCPLKSTSPQSPSS---STENEPPPVSVTSPPARKRALEES 75

Query: 209 KTSPLRR 229
             +P+++
Sbjct: 76  TVTPIQQ 82


>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical protein
            W06A7.3f protein.
          Length = 2488

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +3

Query: 273  QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTK--LKHTETCEKNSLPTKDVIE 446
            QL+  + Q+K  + + +  + E    K ++ +EN  P +  L    T  KNS   K++  
Sbjct: 1194 QLEAKKDQDKETIENSEDAKKETVMEKLVSLVENILPVEAVLPSDSTVTKNSEDKKELET 1253

Query: 447  QEKSA 461
            QE S+
Sbjct: 1254 QELSS 1258


>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical protein
            W06A7.3c protein.
          Length = 2484

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +3

Query: 273  QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTK--LKHTETCEKNSLPTKDVIE 446
            QL+  + Q+K  + + +  + E    K ++ +EN  P +  L    T  KNS   K++  
Sbjct: 1194 QLEAKKDQDKETIENSEDAKKETVMEKLVSLVENILPVEAVLPSDSTVTKNSEDKKELET 1253

Query: 447  QEKSA 461
            QE S+
Sbjct: 1254 QELSS 1258


>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical protein
            W06A7.3a protein.
          Length = 2607

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +3

Query: 273  QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTK--LKHTETCEKNSLPTKDVIE 446
            QL+  + Q+K  + + +  + E    K ++ +EN  P +  L    T  KNS   K++  
Sbjct: 1194 QLEAKKDQDKETIENSEDAKKETVMEKLVSLVENILPVEAVLPSDSTVTKNSEDKKELET 1253

Query: 447  QEKSA 461
            QE S+
Sbjct: 1254 QELSS 1258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,106,451
Number of Sequences: 27780
Number of extensions: 372786
Number of successful extensions: 1272
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)