Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20263
         (756 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10180.1 68416.m01219 kinesin motor protein-related similar t...    35   0.051
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ...    31   0.83 
At3g47180.1 68416.m05123 zinc finger (C3HC4-type RING finger) fa...    29   2.5  
At3g28770.1 68416.m03591 expressed protein                             29   2.5  
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d...    29   3.3  
At1g51900.1 68414.m05850 hypothetical protein                          29   3.3  
At1g23230.1 68414.m02906 expressed protein                             29   3.3  
At3g45530.1 68416.m04917 DC1 domain-containing protein contains ...    29   4.4  
At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containi...    29   4.4  
At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f...    28   5.8  
At3g57780.1 68416.m06436 expressed protein                             28   5.8  
At5g42490.1 68418.m05172 kinesin motor family protein contains P...    28   7.7  
At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si...    28   7.7  
At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA methyltran...    28   7.7  
At2g02720.1 68415.m00214 pectate lyase family protein similar to...    28   7.7  

>At3g10180.1 68416.m01219 kinesin motor protein-related similar to
            centromere protein E GB:4502781 [Homo sapiens]
          Length = 1348

 Score = 35.1 bits (77), Expect = 0.051
 Identities = 25/83 (30%), Positives = 38/83 (45%)
 Frame = +3

Query: 213  RRH*EDPEVFIRRYEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKL 392
            ++H    ++    +E   S  L H E  EK+ +    +    KEK       E    TKL
Sbjct: 776  QKHETSLKMLSEHHESERSDLLSHIECLEKD-IGSLSSSSLAKEKENLRKDFEK-TKTKL 833

Query: 393  KHTETCEKNSLPTKDVIEQEKSA 461
            K TE+  KNS+  K  +E EK++
Sbjct: 834  KDTESKLKNSMQDKTKLEAEKAS 856


>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
            SP|Q07283 Trichohyalin {Homo sapiens}
          Length = 1400

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = +3

Query: 273  QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFD-PTKLKHTETCEKNSLPTKDVIEQ 449
            Q+K  + +E+N    K+ +E  + + K    +E  +   +LK T   E+N    ++ IE 
Sbjct: 778  QIKERQEREENERRAKEVLEQAENERKLKEALEQKENERRLKETREKEENKKKLREAIEL 837

Query: 450  EKSAXXXXXXXXXANVSR 503
            E+           A + R
Sbjct: 838  EEKEKRLIEAFERAEIER 855



 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +3

Query: 255  EKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFD-PTKLKHTETCEKNSLPT 431
            +K +  +LK T  +E+N    ++AIE E+++ + +   E  +   +LK     E+  +  
Sbjct: 811  QKENERRLKETREKEENKKKLREAIELEEKEKRLIEAFERAEIERRLKEDLEQEEMRMRL 870

Query: 432  KDVIEQEK 455
            ++  E+E+
Sbjct: 871  QEAKERER 878


>At3g47180.1 68416.m05123 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 210

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = +3

Query: 225 EDPEVFIRRYEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTE 404
           ++ E+    YE FDS+     E +    L D+++    +E++ FL   +  DP +L + E
Sbjct: 62  DEEEINENYYEYFDSNGFGVDEDEINEFLEDQESNSNLEEEDDFLEEEDEIDPDQLSYEE 121


>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +3

Query: 243 IRRYEKFDSSQLKHTETQEKNPLPD-KDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKN 419
           +R  E+      K +E  EK    + KDA   E + NK L+  EN D  K +  E  +++
Sbjct: 768 VRNKEENVQGNKKESEKVEKGEKKESKDAKSVETKDNKKLSSTENRDEAKERSGEDNKED 827

Query: 420 SLPTKD 437
              +KD
Sbjct: 828 KEESKD 833


>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam
           domain PF04931: DNA polymerase V
          Length = 1306

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 285 TETQEKNPLPDKDAIEAEKEKNKFLNGIENFD 380
           TE  E + LPD   ++ +K K + +N + N+D
Sbjct: 12  TELVENDNLPDSSIVKKKKSKTEKMNTVANYD 43


>At1g51900.1 68414.m05850 hypothetical protein
          Length = 774

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 228 DPEVFIRRYEKFDSSQLKHTETQEKNPLPDKDAIEAEK 341
           DP+++IR YE+  +   K + T  +  + + D+IE  K
Sbjct: 362 DPDIYIRSYEESPNEVYKFSLTDLEEEIMENDSIEGVK 399


>At1g23230.1 68414.m02906 expressed protein
          Length = 1615

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 435 PLWGASSSRTFPCASA*WDRSSRC-RSGICSFPSP 334
           PL+G   + + P  S  W+R+ RC R  I + PSP
Sbjct: 393 PLYGEDLAMSIPKGSLDWERAVRCIRHAIRTTPSP 427


>At3g45530.1 68416.m04917 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 692

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -3

Query: 481 CYKVVVQADFSCSMT--SFVGSEFFSHVSVCFSLVGSKFSMPF 359
           C++ ++  DF C      F    F+S   V F L+ S  +MPF
Sbjct: 438 CFESIIDDDFLCRACYQMFCEGFFYSSKGVNFDLICSSITMPF 480


>At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containing
           protein contains Pfam profile PF01388: ARID/BRIGHT DNA
           binding domain
          Length = 786

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +1

Query: 76  SVSDTPSLKDLPKVATDLKSQLEGF---NTSCLRDVDTNEKIVLPSAEDVATEKTQKS 240
           S+ +  +  DLPK+  +  SQ E     + S    +DT E ++ P+AED   E    S
Sbjct: 78  SLEEVTNADDLPKIDDEKNSQFETSPHPSPSPSVALDTEEGLINPTAEDTVEENIVSS 135


>At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase
           family protein / UPP synthetase family protein contains
           putative undecaprenyl diphosphate synthase domain
           [PF01255]; similar to S. cerevisiae dehydrodolichyl
           diphosphate synthetase (DEDOL-PP
           synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
          Length = 271

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -1

Query: 228 LLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLG 109
           ++ G+    +KHNL IG+D    AG  + +  LQ C ++G
Sbjct: 41  IMDGNRRFAKKHNL-IGLDAGHRAGFISVKYILQYCKEIG 79


>At3g57780.1 68416.m06436 expressed protein
          Length = 670

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 264 DSSQLKHTETQEK-NPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCE 413
           DSS+   TE +E  N L   D  E EKE++K L+ I +     +   ETCE
Sbjct: 72  DSSE--KTEKEETINGLACDDEDEEEKEESKELDAIAHEKTDSVSSPETCE 120


>At5g42490.1 68418.m05172 kinesin motor family protein contains Pfam
           domain, PF00225: Kinesin motor domain
          Length = 1087

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = +3

Query: 255 EKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNSLPTK 434
           E  +S +  + E Q KN   ++    + K+  + LN  EN   ++ + TE CE NSLP  
Sbjct: 564 EAQESQESVNEEEQMKNE--ERKMSPSTKQAEQCLNKEENAQ-SEQQSTEDCELNSLPIN 620

Query: 435 DVIE 446
           +  E
Sbjct: 621 NQSE 624


>At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative
           similar to sucrose-phosphate synthase isoform 1, Citrus
           unshiu, PIR:S72648
          Length = 894

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +1

Query: 76  SVSDTPS--LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEK 228
           S SD+PS  L+D+  ++ +LK  L+G  +     VDTN       AED A E+
Sbjct: 532 SDSDSPSDSLRDINDISLNLKLSLDGEKSGSNNGVDTN-----LDAEDRAAER 579


>At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA
           methyltransferase family protein similar to
           N2,N2-dimethylguanosine tRNA methyltransferase [Homo
           sapiens] GI:11066198; contains Pfam profile PF02005:
           N2,N2-dimethylguanosine tRNA methyltransferase
          Length = 599

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 234 EVFIRRYEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFD 380
           E   +R ++ ++   K T    K  + +KDA EA KE+    NG+ N D
Sbjct: 45  EFLSKRKQEHEAKSSKRTRPASK--VIEKDASEASKEETPSENGMNNGD 91


>At2g02720.1 68415.m00214 pectate lyase family protein similar to
           pectate lyase P59 SP:P15722 from [Lycopersicon
           esculentum]
          Length = 455

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/58 (27%), Positives = 23/58 (39%)
 Frame = +3

Query: 279 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNSLPTKDVIEQE 452
           K    +E  P P+  +   + EK+ FLNG       K        KN +P K  I  +
Sbjct: 375 KQVTKREYTPYPEWKSWNWQSEKDYFLNGAYFVQSGKANAWSATPKNPIPRKFAIRPQ 432


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,200,179
Number of Sequences: 28952
Number of extensions: 350273
Number of successful extensions: 1134
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)