Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20262
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...    76   5e-15
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...    75   9e-15
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    73   6e-14
SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyce...    28   1.3  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   3.1  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    26   7.1  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   7.1  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    25   9.4  

>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 76.2 bits (179), Expect = 5e-15
 Identities = 36/61 (59%), Positives = 42/61 (68%)
 Frame = +1

Query: 253 QRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNC 432
           +RAE Y  EYR  ER++I L R+AR  GNYYVP E KL FVIRIRGIN + PK+ K    
Sbjct: 54  KRAESYDAEYRKAEREQIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQL 113

Query: 433 L 435
           L
Sbjct: 114 L 114



 Score = 69.3 bits (162), Expect = 6e-13
 Identities = 28/52 (53%), Positives = 42/52 (80%)
 Frame = +2

Query: 509 PYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 664
           PY+ +G PNLK+VREL+YKRGF K++ QRI ++ N+I+E  L K++I+ +ED
Sbjct: 140 PYVTYGIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSIED 191



 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 20/34 (58%), Positives = 27/34 (79%)
 Frame = +3

Query: 408 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAD 509
           + RK++QL RL QINNGVFV+ NKAT  ML++ +
Sbjct: 106 KARKIMQLLRLIQINNGVFVKFNKATKEMLQVVE 139



 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = +1

Query: 664 LIHEIFTVGEKFKYASNFLWP 726
           LIHEI+TVG  FK A+NF+WP
Sbjct: 192 LIHEIYTVGPNFKQAANFIWP 212


>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 75.4 bits (177), Expect = 9e-15
 Identities = 35/61 (57%), Positives = 43/61 (70%)
 Frame = +1

Query: 253 QRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNC 432
           +RAE Y  EYR  ER++I LAR+AR  GNY+VP E KL FV+RIRGIN + PK+ K    
Sbjct: 53  KRAEAYEAEYRAAEREQIELARKARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQL 112

Query: 433 L 435
           L
Sbjct: 113 L 113



 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 29/52 (55%), Positives = 42/52 (80%)
 Frame = +2

Query: 509 PYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 664
           PY+ +G PN K+VREL+YKRGF K++ QRIP++ N+I+E  L K++I+ VED
Sbjct: 139 PYVTYGIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVED 190



 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 18/34 (52%), Positives = 26/34 (76%)
 Frame = +3

Query: 408 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAD 509
           + RK++QL RL QINNG+FV+ NKA   ML++ +
Sbjct: 105 KARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVE 138



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 16/21 (76%), Positives = 18/21 (85%)
 Frame = +1

Query: 664 LIHEIFTVGEKFKYASNFLWP 726
           LIHEI+TVG  FK A+NFLWP
Sbjct: 191 LIHEIYTVGPNFKQAANFLWP 211


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 72.5 bits (170), Expect = 6e-14
 Identities = 28/52 (53%), Positives = 43/52 (82%)
 Frame = +2

Query: 509 PYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 664
           PY+ +G PNL SVREL+YKRGF K++GQRI ++ N+++E+ L K+++I +ED
Sbjct: 138 PYVMYGIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIED 189



 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 29/61 (47%), Positives = 40/61 (65%)
 Frame = +1

Query: 253 QRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNC 432
           +RAE ++  YR +ER+ IRL R A+N+G+ +VP E KL FVIRI G+  + PK  K    
Sbjct: 52  KRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRL 111

Query: 433 L 435
           L
Sbjct: 112 L 112



 Score = 45.6 bits (103), Expect = 8e-06
 Identities = 21/34 (61%), Positives = 26/34 (76%)
 Frame = +3

Query: 408 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAD 509
           ++RKVL+L RL +INN VFVR NKA   MLRI +
Sbjct: 104 KIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVE 137



 Score = 33.5 bits (73), Expect = 0.035
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 664 LIHEIFTVGEKFKYASNFLWP 726
           +IHEI+ VG  FK  + FLWP
Sbjct: 190 IIHEIYNVGSHFKEVTKFLWP 210


>SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 90

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +1

Query: 208 AKEAFFCHQEEEGNLQRAEQYVKEYRIKERDEIRLARQARNRGN 339
           AKE FF HQ E   L++ ++ +K +R +E DE+      + + N
Sbjct: 47  AKEDFFVHQHEIEQLRKLKESLKLHR-EELDELESRVDKKMKSN 89


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +1

Query: 250 LQRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 357
           + +A Q   ++ +     +RL     N+ N+++PGE
Sbjct: 307 IDKATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = +1

Query: 235 EEEGNLQRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKS 414
           E + NL+     V+EY    +DEI     + N  N     E  + + +    + Q+S + 
Sbjct: 479 EIKSNLEAKSNDVEEYDAFYKDEINCEVLSWNEQNPKASEERVVGYSLPSVNLQQISNQQ 538

Query: 415 VKFCN 429
           +KF +
Sbjct: 539 LKFAS 543


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -1

Query: 717  EITRVLELFSNSEDLMDESSTQIMLCLWSLFSTMLLEVIGI 595
            E+ ++  LF NSED+M +  +  ++ L+ L S    E++ +
Sbjct: 1776 EMLKMCSLFGNSEDVMIKQLSIYVMSLFILRSQFPYELVNV 1816


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -1

Query: 261 SPLKISLFFLMAEERLFSVTCNLLVRRASLLLRCLSTDSGTAGSFLLSSFPL 106
           S LK +   L +E  + + + NL+V+    +L      + T G FL SS P+
Sbjct: 237 SHLKKAFTKLFSEPTMVNKSINLIVQARQQILSTAYLTALTRGDFLSSSRPI 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,162,531
Number of Sequences: 5004
Number of extensions: 65632
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)