Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20262
(789 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 86 3e-17
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 80 2e-15
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 65 7e-11
02_03_0221 - 16554910-16555560 29 5.6
03_01_0270 - 2085461-2086205,2086260-2086339,2086598-2086690,208... 28 7.4
01_06_0457 - 29524544-29525962,29526518-29526606,29526841-295268... 28 9.7
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 85.8 bits (203), Expect = 3e-17
Identities = 34/52 (65%), Positives = 46/52 (88%)
Frame = +2
Query: 509 PYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 664
PY+A+GYPNLKSVREL+YKRG+ KL+ QRIP+ +N ++E+ L KH+IIC+ED
Sbjct: 135 PYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGLGKHDIICIED 186
Score = 66.5 bits (155), Expect = 2e-11
Identities = 30/60 (50%), Positives = 43/60 (71%)
Frame = +1
Query: 256 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 435
RA+QY +EY +E++ ++L R+AR +G +YV EAKL FV+RIRGIN + PK+ K L
Sbjct: 50 RAKQYAQEYDAQEKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLL 109
Score = 50.8 bits (116), Expect = 1e-06
Identities = 22/31 (70%), Positives = 28/31 (90%)
Frame = +3
Query: 408 EVRKVLQLFRLRQINNGVFVRLNKATVNMLR 500
+ RK+LQL RLRQI NGVF+++NKAT+NMLR
Sbjct: 101 KTRKILQLLRLRQIFNGVFLKVNKATINMLR 131
Score = 38.3 bits (85), Expect = 0.007
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +1
Query: 664 LIHEIFTVGEKFKYASNFLWP 726
L+HEI TVG FK A+NFLWP
Sbjct: 187 LVHEIMTVGPHFKEANNFLWP 207
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 80.2 bits (189), Expect = 2e-15
Identities = 35/58 (60%), Positives = 47/58 (81%), Gaps = 6/58 (10%)
Frame = +2
Query: 509 PYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKR------LHKHNIICVED 664
PY+A+GYPNLKSVREL+YKRG+ KL+ QRIP+T+N ++E+ L KH+IIC+ED
Sbjct: 134 PYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEESWCLYQGLGKHDIICIED 191
Score = 65.3 bits (152), Expect = 5e-11
Identities = 29/60 (48%), Positives = 42/60 (70%)
Frame = +1
Query: 256 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 435
RA+QY +EY +E++ ++L R+AR +G +YV E KL FV+RIRGIN + PK+ K L
Sbjct: 49 RAKQYAEEYEAQEKELVQLKREARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLL 108
Score = 50.8 bits (116), Expect = 1e-06
Identities = 22/31 (70%), Positives = 28/31 (90%)
Frame = +3
Query: 408 EVRKVLQLFRLRQINNGVFVRLNKATVNMLR 500
+ RK+LQL RLRQI NGVF+++NKAT+NMLR
Sbjct: 100 KTRKILQLLRLRQIFNGVFLKVNKATINMLR 130
Score = 38.3 bits (85), Expect = 0.007
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +1
Query: 664 LIHEIFTVGEKFKYASNFLWP 726
L+HEI TVG FK A+NFLWP
Sbjct: 192 LVHEIMTVGPHFKEANNFLWP 212
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 64.9 bits (151), Expect = 7e-11
Identities = 25/52 (48%), Positives = 40/52 (76%)
Frame = +2
Query: 509 PYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 664
P+I +G+PNLK+V++L+YK+G L + P+TSN ++EK L ++ IIC+ED
Sbjct: 137 PFITYGFPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALGEYGIICLED 188
Score = 37.1 bits (82), Expect = 0.016
Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 8/170 (4%)
Frame = +1
Query: 241 EGNLQRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE---AKLAFVIRIRGINQVSPK 411
+G ++R E +V+E+R KE D +R+ + + R P E +KL F IRI G + P
Sbjct: 46 KGAIKRPEDFVREFRNKELDFVRMKTRLKVRK--LPPAETLNSKLVFAIRIPGTMDLHPH 103
Query: 412 SVKFCNCLDCAK*-TMVCLYV*IRLL*ICYVSPTLHCLGIPQLKECP*VSIQT---WIRQ 579
+ L + T V L + V G P LK + + ++ +
Sbjct: 104 MRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLDK 163
Query: 580 AEWTTYTNHFQQHC*EEAP*TQHYLC*-GLIHEIFTVGEKFKYASNFLWP 726
+ +N E+A +C L+HEI +VG F+ ASNFL P
Sbjct: 164 EPFPLTSNDLI----EKALGEYGIICLEDLVHEIASVGPHFREASNFLMP 209
>02_03_0221 - 16554910-16555560
Length = 216
Score = 28.7 bits (61), Expect = 5.6
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = -1
Query: 273 DVLFSPLKISLFFLMAEERLFSVTCNLLVRRASL--LLRCLSTDSGTAGSFLLSSFPLT 103
DVL L ++F +A V C V + LL + +G AGSFL + FP T
Sbjct: 146 DVLHGALSFAVFLAVAMVDRNVVACFYPVESPATRQLLAAVPMAAGAAGSFLFAMFPST 204
>03_01_0270 -
2085461-2086205,2086260-2086339,2086598-2086690,
2086774-2086881,2087012-2087101,2087234-2087275,
2087516-2087587,2090848-2090985,2091074-2092624
Length = 972
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +1
Query: 169 EERGSSH*EITGYAKEAFFCHQEEEGNLQRAEQYVKEYRIKERDEIRLARQARNRG 336
+ RG +H EIT +A ++ + ++ V RIKER E R + +RG
Sbjct: 193 KSRGGNHGEITARDGDATIQESQKRPGKRWIDEPVGNDRIKERSERRTDGKRNSRG 248
>01_06_0457 -
29524544-29525962,29526518-29526606,29526841-29526892,
29527573-29527677,29528181-29528208,29528279-29528343,
29528808-29528880,29528932-29529113
Length = 670
Score = 27.9 bits (59), Expect = 9.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 511 LHCLGIPQLKECP*VSIQTWIRQAEW 588
LHC G+PQ+K +W+R +E+
Sbjct: 109 LHCSGLPQIKLLSRFRRSSWVRTSEY 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,708,711
Number of Sequences: 37544
Number of extensions: 415698
Number of successful extensions: 948
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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