Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20262
         (789 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)       87   2e-17
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)                    28   7.5  
SB_24051| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_20261| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)                    28   9.9  

>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 38/53 (71%), Positives = 45/53 (84%)
 Frame = +2

Query: 506 RPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 664
           +PYIA+GYPNLKSVREL+YKRG+ K+  QR+ +T NSIVEK L KH IICVED
Sbjct: 134 QPYIAFGYPNLKSVRELIYKRGYGKVDKQRVALTDNSIVEKVLGKHGIICVED 186



 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 40/69 (57%), Positives = 50/69 (72%)
 Frame = +1

Query: 229 HQEEEGNLQRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSP 408
           H + +   +RAE+YVKEYR KE DE+R+ + A+  GN+YVP EA+LAFVIRIRGIN VSP
Sbjct: 41  HGKRKEIFKRAEKYVKEYRQKEVDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSP 100

Query: 409 KSVKFCNCL 435
           K  K    L
Sbjct: 101 KVRKILQLL 109



 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 28/32 (87%), Positives = 30/32 (93%)
 Frame = +3

Query: 408 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRI 503
           +VRK+LQL RLRQINNGVFVRLNKAT NMLRI
Sbjct: 101 KVRKILQLLRLRQINNGVFVRLNKATANMLRI 132


>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 314 PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRSP*SSATV*TAPNK 451
           PDK A+  TTT P   +   ++     T + R P  S T+ T P K
Sbjct: 363 PDKTAVPKTTTAPETTDASKTTVETQQTTYSRDPEISVTISTQPKK 408


>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
          Length = 1338

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +2

Query: 206  TLKRRSSAIKKKREIFRGLNSTSRNTASRNVMKSD 310
            T+ RR   +KKKRE+     S SRN     V +SD
Sbjct: 949  TIDRRRKRLKKKREVTDSFRSYSRNEIFFWVTQSD 983


>SB_24051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 889

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = -3

Query: 514 VRSAIRSIFTVALFRRTNTPLFIWRSLNSCRTLRTSVKLG*YH 386
           VR  +  +F+V+L  R N  LF  RSL SC    T V +G  H
Sbjct: 825 VRPFLPVVFSVSLDSRYNE-LFTGRSLQSCGNQGTGVVIGGDH 866


>SB_20261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +1

Query: 247 NLQRAEQYVKEYRIKERDEIRL 312
           N+++ EQ V   +IKE+D+IRL
Sbjct: 23  NIRQTEQMVASIKIKEQDQIRL 44


>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
          Length = 712

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 289 KERDEIRLARQARNRGNYYVP 351
           K RD   +AR+ R+RG YY+P
Sbjct: 483 KIRDTSSIARETRSRGPYYLP 503


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,972,097
Number of Sequences: 59808
Number of extensions: 494605
Number of successful extensions: 1053
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)